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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BACILLUS MEGATERIUM QM B1551 SPORE CORTEX-LYTIC ENZYME SLEL
 
Authors :  G. Christie, D. Y. Chirgadze, F. I. Ustok
Date :  04 Feb 15  (Deposition) - 19 Aug 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Tim Barrel, N-Acetylglucosaminidase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. I. Ustok, D. Y. Chirgadze, G. Christie
Structural And Functional Analysis Of Slel, A Peptidoglycan Lysin Involved In Germination Of Bacillus Spores.
Proteins V. 83 1787 2015
PubMed-ID: 26190134  |  Reference-DOI: 10.1002/PROT.24861

(-) Compounds

Molecule 1 - SPORE GERMINATION PROTEIN YAAH
    Chains: A
    EC Number: 3.2.1.-
    Engineered: YES
    Expression System: LACTOCOCCUS LACTIS
    Expression System Plasmid: PNZ
    Expression System Taxid: 1358
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 2-433
    Gene: 8984459 (BMQ_0021), BMQ_0021, YAAH
    Organism Scientific: BACILLUS MEGATERIUM
    Organism Taxid: 545693
    Strain: ATCC 12872 / QMB1551

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:276 , ARG A:377 , ARG A:402 , ARG A:429 , HOH A:645 , HOH A:727BINDING SITE FOR RESIDUE SO4 A 501
2AC2SOFTWAREARG A:92 , HOH A:700 , HOH A:712BINDING SITE FOR RESIDUE SO4 A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4S3K)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ala A:138 -Asn A:139
2Leu A:330 -Pro A:331
3Trp A:407 -Lys A:408

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4S3K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4S3K)

(-) Exons   (0, 0)

(no "Exon" information available for 4S3K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:429
                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.....hhhhhhhhhh.hhhhhhhhh............eeee....eeee.....hhhhhhhhh..hhhhhhhhh............eeee......eeeeeeeeee......hhhhhhhhhhhhhhh.eeeee.eee.....ee.....hhhhhhhhh..eeeeeee.ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeee....hhhhhhhhhhhhhhhhhhhhhh..eeeeee................hhhhhhhhh.eeee............hhhhhhhhhhhhhhhhhhhh.eeeee..eeeee..........eeehhhhhhhhhhhh....eee....eeeeeee.....eeeee..hhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhheee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4s3k A  -2 GGFAQIYTVKAGDSIYSIAKQFRIDAGKIIRANELPNPNQLVIGQSMVIPINGTYYTVKAGDTIWKVGRKLGVSYQAIANANNVSVTAPLTPGRRILIPPSPNKRNGEFLGYVETSNRKITPQTEKMINQNAKYLTYLGPANFEVQKDGSLKAPPLNNLGSIAKENDVIFLMVLANIENGAFSDEVGRAILNNKDVQDTLLNNIVKTAKEQNFRDIHFDFEFLRPADKEAYIAFLQKAKKRLQDEQLLMSVALAPKTSRDQKGKWYEAHDYKAIGEIANFVVPMTYEGGPPMAVSPIGPVRDVLEYAVSEIPSSKIIMGQNLYGYDWTLPYKPGGEYAKAISPQRAIELAARYKVAIQYDNKAQAPFFRYKDEQQRTHEVWFEDARSIQAKFDLIKELKLRGMAYWKLGLDFPQNWLLIEDNFKITKRV 430
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277      |291       301       311       321       331       341       351       361       371       381       391       401       411       421         
                                                                                                                                                                                                                                                                                                                        284|                                                                                                                                             
                                                                                                                                                                                                                                                                                                                         289
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4S3K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4S3K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4S3K)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:138 - Asn A:139   [ RasMol ]  
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    Trp A:407 - Lys A:408   [ RasMol ]  
 

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 Related Entries

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(-) Related Entries Specified in the PDB File

3cz8 CRYSTAL STRUCTURE OF PUTATIVE SPORULATION-SPECIFIC GLYCOSYLASE YDHD FROM BACILLUS SUBTILIS
4f55 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE BACILLUS CEREUS SLEB PROTEIN
4fet CATALYTIC DOMAIN OF GERMINATION-SPECIFIC LYTIC TRANSGLYCOSYLASE SLEB FROM BACILLUS ANTHRACIS
4s3j