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(-) Description

Title :  CRYSTAL STRUCTURE OF PERIPLASMIC SOLUTE BINDING PROTEIN ECA2210 FROM PECTOBACTERIUM ATROSEPTICUM SCRI1043, TARGET EFI-510858
 
Authors :  Y. Patskovsky, R. Toro, R. Bhosle, N. Al Obaidi, L. L. Morisco, S. R. Was S. Chamala, J. D. Attonito, A. Scott Glenn, S. Chowdhury, J. Lafleur, B. Hillerich, R. D. Siedel, J. Love, K. L. Whalen, J. A. Gerlt, S. C. Almo Function Initiative (Efi)
Date :  12 Dec 14  (Deposition) - 24 Dec 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Sugar Transporter, Abc-Type, Enzyme Function Initiative, Efi, Structural Genomics, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, R. Toro, R. Bhosle, N. Al Obaidi, S. Chamala, A. Scott Glenn, J. D. Attonito, S. Chowdhury, J. Lafleur, B. Hillerich, L. L. Morisco, S. R. Wasserman, R. D. Siedel, J. Love, K. L. Whalen, J. A. Gerlt, S. C. Almo
Crystal Structure Of Periplasmic Solute Binding Protein Eca2210 From Pectobacterium Atrosepticum, Target Efi-510858
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PERIPLASMIC SOLUTE BINDING PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 31-439
    Gene: ECA2210
    Organism Scientific: PECTOBACTERIUM ATROSEPTICUM
    Organism Taxid: 218491
    Strain: SCRI 1043 / ATCC BAA-672

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2GOL6Ligand/IonGLYCEROL
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2GOL3Ligand/IonGLYCEROL
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2GOL3Ligand/IonGLYCEROL

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:93 , SER A:279 , LYS A:313 , SER A:315 , HOH A:642 , HOH A:699 , HOH A:983BINDING SITE FOR RESIDUE GOL A 501
2AC2SOFTWARELYS A:152 , ASP A:156 , ALA A:161 , TYR A:162 , GLU A:295BINDING SITE FOR RESIDUE GOL A 502
3AC3SOFTWAREMET A:148 , SER A:205 , TYR A:275 , PRO A:298 , PHE A:299 , ILE A:300 , HOH A:670 , HOH A:822BINDING SITE FOR RESIDUE GOL A 503
4AC4SOFTWARETRP A:38 , ARG A:43 , THR A:283 , HOH A:699 , HOH A:800 , HOH A:906BINDING SITE FOR RESIDUE ACT A 504
5AC5SOFTWAREASP B:93 , SER B:279 , LYS B:313 , SER B:315 , HOH B:638 , HOH B:642 , HOH B:995BINDING SITE FOR RESIDUE GOL B 501
6AC6SOFTWARELYS B:152 , ASP B:156 , TYR B:162 , GLU B:295BINDING SITE FOR RESIDUE GOL B 502
7AC7SOFTWAREMET B:148 , SER B:205 , TYR B:275 , PRO B:298 , PHE B:299 , ILE B:300 , HOH B:666BINDING SITE FOR RESIDUE GOL B 503
8AC8SOFTWARETRP B:38 , ARG B:43 , THR B:283 , HOH B:638 , HOH B:714 , HOH B:977BINDING SITE FOR RESIDUE ACT B 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RY1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RY1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RY1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RY1)

(-) Exons   (0, 0)

(no "Exon" information available for 4RY1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:410
                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhhhhhhhh..eeeeeeee...hhhhhhhhhhhh.....eeeehhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.ee..ee..eeeeeeeeeeeeehhhhhhhh.....hhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh...ee....ee..hhhhhhhhhhhhhhhhhh....hhhhhhh....hhhhhhhhhh....eeeee..hhhhhhh.......eee...............eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh......hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ry1 A  30 MAEIRISWWGGNQRHEATLAAINAFQKANPTITVKAEYAGWDGYLSRLSTQIAGGQEPDVMRIDWNWLPQFSRNGDGFYDLNKQKDILGLGDFPPNALKTADVKGKLQGLPISMTSRSMIYNKTTWDNAGVAYPKTWDELFAAGPVFKQKLGDSYYPLGVAQGASDVLDILTLGRSYMAQKYGIDMIDEKKQSIAYSRDQVRELFGFYKKLVDSHVIPDQRYFSSFGRTNVYEIRPWINGELAGMYLWDSAIYTYSSNMPKDAVLETGPFITIPGAKDSGLTSKPSSLFAISKNSKHPKEAAMLMNFMLSNPEGVKALGLQNGMPANPKAQKLLEDIGVINPGNLLANAYRAAAAQPESKVAVSPFMENQELVQLWTTSLQKLDYGNGEVNKVADDFLSGANRILKRAIR 439
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439


Chain B from PDB  Type:PROTEIN  Length:410
                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhhhhhhhh..eeeeeeee...hhhhhhhhhhhh.....eeeehhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.ee..ee..eeeeeeeeeeeeehhhhhhhh.....hhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh...ee....ee..hhhhhhhhhhhhhhhhhh....hhhhhhh....hhhhhhhhhh....eeeee..hhhhhhh.......eee...............eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh......hhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ry1 B  30 MAEIRISWWGGNQRHEATLAAINAFQKANPTITVKAEYAGWDGYLSRLSTQIAGGQEPDVMRIDWNWLPQFSRNGDGFYDLNKQKDILGLGDFPPNALKTADVKGKLQGLPISMTSRSMIYNKTTWDNAGVAYPKTWDELFAAGPVFKQKLGDSYYPLGVAQGASDVLDILTLGRSYMAQKYGIDMIDEKKQSIAYSRDQVRELFGFYKKLVDSHVIPDQRYFSSFGRTNVYEIRPWINGELAGMYLWDSAIYTYSSNMPKDAVLETGPFITIPGAKDSGLTSKPSSLFAISKNSKHPKEAAMLMNFMLSNPEGVKALGLQNGMPANPKAQKLLEDIGVINPGNLLANAYRAAAAQPESKVAVSPFMENQELVQLWTTSLQKLDYGNGEVNKVADDFLSGANRILKRAIR 439
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RY1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RY1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RY1)

(-) Gene Ontology  (0, 0)

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    (no "Gene Ontology" information available for 4RY1)

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