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(-) Description

Title :  2.65 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF AN OROTATE PHOSPHORIBOSYLTRANSFERASE FROM BACILLUS ANTHRACIS STR. 'AMES ANCESTOR' IN COMPLEX WITH 5-PHOSPHO-ALPHA-D-RIBOSYL DIPHOSPHATE (PRPP)
 
Authors :  A. S. Halavaty, G. Minasov, L. Shuvalova, J. Winsor, W. F. Anderson, Cen Structural Genomics Of Infectious Diseases (Csgid)
Date :  24 Nov 14  (Deposition) - 17 Dec 14  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C  (2x)
Keywords :  Pyrimidine Ribonucleotide Biosynthesis, Center For Structural Genomics Of Infectious Diseases, Csgid, Glycosyltransferase, Pyrimidine Biosynthesis, Transferase, Niaid, National Institute Of Allergy And Infectious Diseases (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Halavaty, G. Minasov, L. Shuvalova, J. Winsor, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
2. 65 Angstrom Resolution Crystal Structure Of An Orotate Phosphoribosyltransferase From Bacillus Anthracis Str. 'Ame Ancestor' In Complex With 5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - OROTATE PHOSPHORIBOSYLTRANSFERASE
    Chains: A, B, C
    EC Number: 2.4.2.10
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)/PMAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BAS3733, BA_4021, GBAA_4021, PYRE
    Organism Common: ANTHRAX,ANTHRAX BACTERIUM
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392
    Strain: AMES ANCESTOR
    Synonym: OPRT, OPRTASE

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): AB 
Biological Unit 2 (2x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
2PRP3Ligand/IonALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
2PRP2Ligand/IonALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
2PRP2Ligand/IonALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:38 , THR A:73 , ALA A:74 , GLU A:120 , ASP A:121 , LEU A:122 , SER A:124 , THR A:125 , GLY A:126 , GLY A:127 , SER A:128 , HOH A:407 , TYR B:92 , ARG B:94BINDING SITE FOR RESIDUE PRP A 301
2AC2SOFTWAREPHE A:16BINDING SITE FOR RESIDUE PEG A 302
3AC3SOFTWARETYR A:92 , ARG A:94 , ARG B:38 , ALA B:72 , THR B:73 , ALA B:74 , GLU B:120 , ASP B:121 , LEU B:122 , SER B:124 , THR B:125 , GLY B:126 , SER B:128 , HOH B:416BINDING SITE FOR RESIDUE PRP B 301
4AC4SOFTWAREARG C:38 , ASP C:121 , SER C:124 , THR C:125 , GLY C:126 , GLY C:127 , SER C:128 , HOH C:402 , HOH C:404BINDING SITE FOR RESIDUE PRP C 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RV4)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Ala A:72 -Thr A:73
2Ala B:72 -Thr B:73
3Ala C:72 -Thr C:73

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RV4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RV4)

(-) Exons   (0, 0)

(no "Exon" information available for 4RV4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..eee.....ee.....ee.eee.hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhh...eeee...........eeeeeeeee..hhhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhhhhh...eeeeeehhhhhhhhhhh...hhhhhhhhhhhhhh....hhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rv4 A  -2 SNAMKKEIASHLLEIGAVFLQPNDPFTWSSGMKSPIYCDNRLTLSYPKVRQTIAAGLEELIKEHFPTVEVIAGTATAGIAHAAWVSDRMDLPMCYVRQIEGKAEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIFTYELEAGKEKLEAANVASYSLSDYSALTEVAAEKGIIGQAETKKLQEWRKNPADEAWITA 210
                                     7        17        27        37        47        57        67        77        87      |107       117       127       137       147       157       167       177       187       197       207   
                                                                                                                           94|                                                                                                         
                                                                                                                           105                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh..eee.....ee.....ee.eee.hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhh..eeee.....ee.......eeeeeeeee..hhhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhhhhh...eee..hhhhhhhhhhhh......hhhhhhhhhhh....hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rv4 B  -7 NLYFQSNAMKKEIASHLLEIGAVFLQPNDPFTWSSGMKSPIYCDNRLTLSYPKVRQTIAAGLEELIKEHFPTVEVIAGTATAGIAHAAWVSDRMDLPMCYVRSGNQIEGKAEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIFTYELEAGKEKLEAANVASYSLSDYSALTEVAAEKGIIGQAETKKLQEWRKNPADEAWITA 210
                                     2        12        22        32        42        52        62        72        82        92  ||   109       119       129       139       149       159       169       179       189       199       209 
                                                                                                                                 95|                                                                                                           
                                                                                                                                 103                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh..eee.....ee.....ee.eee.hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhh..eeee.........eeeeeeeee..hhhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhhhhh...eeeeeehhhhhhhhhhh...hhhhhhhhhhhhhh....hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rv4 C  -3 QSNAMKKEIASHLLEIGAVFLQPNDPFTWSSGMKSPIYCDNRLTLSYPKVRQTIAAGLEELIKEHFPTVEVIAGTATAGIAHAAWVSDRMDLPMCYVIEGKAEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIFTYELEAGKEKLEAANVASYSLSDYSALTEVAAEKGIIGQAETKKLQEWRKNPADEAWITA 210
                                     6        16        26        36        46        56        66        76        86      |108       118       128       138       148       158       168       178       188       198       208  
                                                                                                                           93|                                                                                                        
                                                                                                                           106
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0 ; only for superseded entry 3OSC: 1,3)

(no "SCOP Domain" information available for 4RV4, only for superseded entry 3OSC replaced by 4RV4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RV4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RV4)

(-) Gene Ontology  (7, 7)

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    Ala A:72 - Thr A:73   [ RasMol ]  
    Ala B:72 - Thr B:73   [ RasMol ]  
    Ala C:72 - Thr C:73   [ RasMol ]  
 
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        PYRE_BACAN | Q81WF6: 3m3h

(-) Related Entries Specified in the PDB File

3m3h 1.75 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF AN OROTATE PHOSPHORIBOSYLTRANSFERASE FROM BACILLUS ANTHRACIS STR. ' AMES ANCESTOR' RELATED ID: CSGID-IDP04423 RELATED DB: TARGETTRACK