4RS3 - JenaLib

Title :   CRYSTAL STRUCTURE OF CARBOHYDRATE TRANSPORTER A0QYB3 FROM MYCOBACTERIUM SMEGMATIS STR. MC2 155, TARGET EFI-510969, IN COMPLEX WITH XYLITOL

Authors :   Y. Patskovsky, R. Toro, R. Bhosle, N. Al Obaidi, L. L. Morisco, S. R. Was S. Chamala, J. D. Attonito, A. Scott Glenn, S. Chowdhury, J. Lafleur, B. Hillerich, R. D. Siedel, J. Love, K. L. Whalen, J. A. Gerlt, S. C. Almo Function Initiative (Efi)

Date :   06 Nov 14 (Deposition) - 19 Nov 14 (Release) - 01 Jun 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.40

Chains :   Asym./Biol. Unit : A

Keywords :   Sugar Transporter, Abc-Type, Enzyme Function Initiative, Efi, Structural Genomics, Transport Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Huang, M. S. Carter, M. W. Vetting, N. Al-Obaidi, Y. Patskovsky, S. C. Almo, J. A. Gerlt
A General Strategy For The Discovery Of Metabolic Pathways: D-Threitol, L-Threitol, And Erythritol Utilization In Mycobacterium Smegmatis.
J. Am. Chem. Soc. V. 137 14570 2015
PubMed-ID: 26560079 | Reference-DOI: 10.1021/JACS.5B08968

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 44)

Sites (36, 36)

Asymmetric Unit (36, 36)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:42 , PHE A:47 , ASN A:121 , ARG A:173 , TRP A:197 , ASN A:224 , ASP A:249 , GLN A:269 , HOH A:501 , HOH A:512 , HOH A:524	BINDING SITE FOR RESIDUE XYL A 401
02	AC2	SOFTWARE	ASP A:43 , ASP A:150 , IMD A:413 , CL A:419	BINDING SITE FOR RESIDUE ZN A 402
03	AC3	SOFTWARE	GLU A:53 , IMD A:414 , CL A:423 , CL A:428	BINDING SITE FOR RESIDUE ZN A 403
04	AC4	SOFTWARE	ASP A:56 , ASP A:186 , CL A:420 , CL A:421	BINDING SITE FOR RESIDUE ZN A 404
05	AC5	SOFTWARE	GLU A:50 , GLU A:252 , CL A:417 , CL A:418	BINDING SITE FOR RESIDUE ZN A 405
06	AC6	SOFTWARE	GLU A:237 , IMD A:416 , ACT A:434 , HOH A:711	BINDING SITE FOR RESIDUE ZN A 406
07	AC7	SOFTWARE	ASP A:200 , CL A:429 , CL A:430 , CL A:432	BINDING SITE FOR RESIDUE ZN A 407
08	AC8	SOFTWARE	ASP A:337 , THR A:347 , HOH A:708	BINDING SITE FOR RESIDUE ZN A 408
09	AC9	SOFTWARE	ASP A:136 , HOH A:665 , HOH A:670 , HOH A:717	BINDING SITE FOR RESIDUE ZN A 409
10	BC1	SOFTWARE	ASP A:128 , ASP A:178 , CL A:422 , ACT A:433	BINDING SITE FOR RESIDUE ZN A 410
11	BC2	SOFTWARE	ASP A:218 , CL A:424 , CL A:425 , ACT A:436	BINDING SITE FOR RESIDUE ZN A 411
12	BC3	SOFTWARE	IMD A:415 , CL A:427 , CL A:431 , HOH A:681	BINDING SITE FOR RESIDUE ZN A 412
13	BC4	SOFTWARE	ASP A:43 , MSE A:44 , GLN A:146 , ASP A:150 , ZN A:402 , IMD A:415 , CL A:419 , CL A:427 , HOH A:635	BINDING SITE FOR RESIDUE IMD A 413
14	BC5	SOFTWARE	GLU A:53 , LYS A:183 , GLU A:252 , ZN A:403 , CL A:423 , CL A:428	BINDING SITE FOR RESIDUE IMD A 414
15	BC6	SOFTWARE	GLN A:143 , ZN A:412 , IMD A:413 , CL A:419 , CL A:426 , CL A:427 , CL A:431 , HOH A:681	BINDING SITE FOR RESIDUE IMD A 415
16	BC7	SOFTWARE	ASP A:136 , GLU A:237 , ZN A:406 , ACT A:434	BINDING SITE FOR RESIDUE IMD A 416
17	BC8	SOFTWARE	GLU A:50 , GLU A:252 , ASP A:253 , ZN A:405	BINDING SITE FOR RESIDUE CL A 417
18	BC9	SOFTWARE	GLU A:50 , GLU A:252 , ZN A:405	BINDING SITE FOR RESIDUE CL A 418
19	CC1	SOFTWARE	ASP A:43 , ASN A:73 , ASP A:150 , LYS A:198 , ZN A:402 , IMD A:413 , IMD A:415	BINDING SITE FOR RESIDUE CL A 419
20	CC2	SOFTWARE	ASP A:56 , LYS A:60 , ASP A:186 , ZN A:404	BINDING SITE FOR RESIDUE CL A 420
21	CC3	SOFTWARE	GLU A:53 , ASP A:56 , ASP A:186 , ZN A:404	BINDING SITE FOR RESIDUE CL A 421
22	CC4	SOFTWARE	ASP A:128 , ILE A:160 , ASP A:178 , ZN A:410 , ACT A:433	BINDING SITE FOR RESIDUE CL A 422
23	CC5	SOFTWARE	GLU A:53 , ARG A:318 , GLN A:319 , ZN A:403 , IMD A:414 , CL A:428	BINDING SITE FOR RESIDUE CL A 423
24	CC6	SOFTWARE	ASP A:218 , ZN A:411 , CL A:425 , ACT A:436	BINDING SITE FOR RESIDUE CL A 424
25	CC7	SOFTWARE	LYS A:155 , ASN A:157 , ASP A:218 , ZN A:411 , CL A:424 , ACT A:436	BINDING SITE FOR RESIDUE CL A 425
26	CC8	SOFTWARE	IMD A:415 , HOH A:549 , HOH A:681	BINDING SITE FOR RESIDUE CL A 426
27	CC9	SOFTWARE	ASP A:200 , ZN A:412 , IMD A:413 , IMD A:415 , CL A:431 , HOH A:681	BINDING SITE FOR RESIDUE CL A 427
28	DC1	SOFTWARE	GLU A:53 , PRO A:105 , ZN A:403 , IMD A:414 , CL A:423	BINDING SITE FOR RESIDUE CL A 428
29	DC2	SOFTWARE	ASP A:200 , ZN A:407	BINDING SITE FOR RESIDUE CL A 429
30	DC3	SOFTWARE	ALA A:139 , ASP A:200 , ZN A:407	BINDING SITE FOR RESIDUE CL A 430
31	DC4	SOFTWARE	ASP A:200 , GLU A:201 , ZN A:412 , IMD A:415 , CL A:427	BINDING SITE FOR RESIDUE CL A 431
32	DC5	SOFTWARE	ASP A:200 , GLN A:233 , ZN A:407	BINDING SITE FOR RESIDUE CL A 432
33	DC6	SOFTWARE	LYS A:111 , ASP A:128 , GLY A:174 , ASP A:178 , LYS A:192 , ZN A:410 , CL A:422 , HOH A:534	BINDING SITE FOR RESIDUE ACT A 433
34	DC7	SOFTWARE	GLU A:237 , VAL A:296 , GLY A:336 , ASP A:337 , ZN A:406 , IMD A:416	BINDING SITE FOR RESIDUE ACT A 434
35	DC8	SOFTWARE	ASP A:56 , LYS A:60 , GLU A:65 , LEU A:66	BINDING SITE FOR RESIDUE ACT A 435
36	DC9	SOFTWARE	PRO A:215 , ASP A:218 , ZN A:411 , CL A:424 , CL A:425	BINDING SITE FOR RESIDUE ACT A 436

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:315
                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhhhhhhhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhh..eeeee......hhhhhhhhhhh...eeee..........eeeeehhhhhhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhhhhh....eeeeeeee...hhhhhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhh......ee....hhhhhhhhhh.....ee..hhhhhhhhhhhhhhhhhh........ee...ee...hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs3 A  34 TKRIGVTVYDmSSFITEGKEGmDTYAKANNIELVWNSANNDVSTQASQVDSLINQGVDAIIVVPVQADSLGPQVASAKSKGIPLLAVNAALETPDLAGNVQPDDVAAGAQEmQmmADRLGGKGNIVILQGPLGGSGEINRGKGIDQVLAKYPDIKVLAKDTANWKRDEAVNKmKNWISSFGPQIDGVVAQNDDmGLGALQALKEAGRTGVPIVGIDGIEDGLNAVKSGDFIGTSLQNGTVELSAGLAVADALVKGEDVKTDPVYVmPAITKDNVDVAIEHVVTERQKFLDGLVELTQQNLKTGDIAYEGIPGQTQ 348
                                    43|       53 |      63        73        83        93       103       113       123       133       143 | ||  153       163       173       183       193       203  |    213       223   |   233       243       253       263       273       283       293     | 303       313       323       333       343     
                                     44-MSE     55-MSE                                                                                   145-MSE                                                      206-MSE              227-MSE                                                                 299-MSE                                             
                                                                                                                                           147-MSE                                                                                                                                                                                                     
                                                                                                                                            148-MSE

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

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