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(-) Description

Title :  CRYSTAL STRUCTURE OF RECEPTOR-CYTOKINE COMPLEX
 
Authors :  S. E. Broughton, M. W. Parker, U. Dhagat
Date :  06 Nov 14  (Deposition) - 11 Nov 15  (Release) - 07 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.68
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cytokine, Receptor, Cytokine Receptor-Cytokine Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. E. Broughton, T. R. Hercus, T. L. Nero, M. Dottore, B. J. Mcclure, U. Dhagat, H. Taing, M. A. Gorman, J. King-Scott, A. F. Lopez, M. W. Parker
Conformational Changes In The Gm-Csf Receptor Suggest A Molecular Mechanism For Affinity Conversion And Receptor Signaling.
Structure V. 24 1271 2016
PubMed-ID: 27396825  |  Reference-DOI: 10.1016/J.STR.2016.05.017

(-) Compounds

Molecule 1 - GRANULOCYTE-MACROPHAGE COLONY-STIMULATING FACTOR RECEPTOR SUBUNIT ALPHA
    Chains: B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: EXTRACELLULAR DOMAIN RESIDUES 35-315
    Gene: CSF2R, CSF2RA, CSF2RY
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GM-CSF-R-ALPHA, GMCSFR-ALPHA, GMR-ALPHA, CDW116
 
Molecule 2 - GRANULOCYTE-MACROPHAGE COLONY-STIMULATING FACTOR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 31-142
    Gene: CSF2, GMCSF
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GM-CSF, COLONY-STIMULATING FACTOR, CSF, MOLGRAMOSTIN, SARGRAMOSTIM

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG B:240 , SER B:255 , ASP B:257BINDING SITE FOR RESIDUE GOL B 303
2AC2SOFTWAREPHE B:108 , TYR B:110 , ASN B:116 , HIS B:160BINDING SITE FOR MONO-SACCHARIDE NAG B 302 BOUND TO ASN B 116
3AC3SOFTWAREASN A:37 , TYR B:134 , LEU B:174 , ASN B:176BINDING SITE FOR MONO-SACCHARIDE NAG B 301 BOUND TO ASN B 176

(-) SS Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1A:54 -A:96
2A:88 -A:121
3B:32 -B:60
4B:41 -B:62
5B:107 -B:117
6B:146 -B:159
7B:209 -B:214

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Lys B:46 -Lys B:47
2Lys B:47 -Asn B:48
3Asp B:152 -Ser B:153
4Glu B:268 -Pro B:269
5Ala B:271 -Lys B:272

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RS1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RS1)

(-) Exons   (0, 0)

(no "Exon" information available for 4RS1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:105
                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh.....eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeehhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 4rs1 A  14 EHVNAIQEARRLLNLSNETVEVISEMFDLQEPTCLQTRLELYKQGLRGSLTKLKGPLTMMASHYKQHCPPTPETSCATQIITFESFKENLKDFLLVIPFDCWEPV 125
                                    23     || 40        50        60        70        80        90       100       110       120     
                                          29|                                                                                        
                                           37                                                                                        


Chain B from PDB  Type:PROTEIN  Length:267
                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.....eee..........eeeeeee...eeee....eee........eeeeeee.....ee..............eeeeeeee...eeeeeee.........eeeeeee.......ee...eee....eeeeee........eeeeeeeee........eeeeeehhhhh.....eeeeee...eeeeee........hhh.eeeeeeeee..eeeeeee.....eeee........eeeeeeeee............ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs1 B  16 SLNVRFDSRTMQLSWDCQEQTTFSKCFLTDKKNRVVEPRLECSCTFREICLHEGVTFEVHVQTSFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREIGIQFFDSLLDTKKIERFNPPSNVTVRCTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKENLLINVSGDLENRYNFPSSEPRAKHSVKIRAADVRILNWSSWSEAIEF 296
                                    25        35        45        55|       68        78   ||   91       101       111       121       131       141       151       161       171       181       191       201       213       223       233       249       259       269       279       289       
                                                                  55|                     82|                                                                                                                        209|                          241|                                                
                                                                   59                      86                                                                                                                         212                           248
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RS1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RS1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RS1)

(-) Gene Ontology  (40, 48)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  4rs1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CSF2R_HUMAN | P15509: 4nkq
        CSF2_HUMAN | P04141: 1csg 2gmf 4nkq 5c7x 5d70 5d71 5d72

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4RS1)