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(-) Description

Title :  CRYSTAL STRUCTURE OF LACI FAMILY TRANSCRIPTIONAL REGULATOR FROM LACTOBACILLUS CASEI, TARGET EFI-512911, WITH BOUND GLYCEROL
 
Authors :  Y. Patskovsky, R. Toro, R. Bhosle, N. Al Obaidi, S. Chamala, J. D. Atton A. Scott Glenn, S. Chowdhury, J. Lafleur, R. D. Siedel, B. Hillerich, K. L. Whalen, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (E
Date :  11 Oct 14  (Deposition) - 05 Nov 14  (Release) - 05 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Sugar Binding, Transcription Regulation, Enzyme Function Initiative, Efi, Structural Genomics, Transcriptional Factor, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, R. Toro, R. Bhosle, N. Al Obaidi, S. Chamala, A. Scott Glenn, J. D. Attonito, S. Chowdhury, J. Lafleur, R. D. Siedel B. Hillerich, J. Love, K. L. Whalen, J. A. Gerlt, S. C. Almo
Crystal Structure Of Laci Transcriptional Regulator Lsei_2103 From Lactobacillus Casei, Target Efi-512911
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR, LACI FAMILY
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 54-333
    Gene: LSEI_2103
    Organism Scientific: LACTOBACILLUS CASEI ATCC 334
    Organism Taxid: 321967

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:71 , ARG A:196 , ASN A:248 , TYR A:276 , ASP A:277 , GLN A:279 , GLN A:294 , HOH A:508 , HOH A:561BINDING SITE FOR RESIDUE GOL A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RK3)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Val A:267 -Pro A:268

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RK3)

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(-) Exons   (0, 0)

(no "Exon" information available for 4RK3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....hhhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhh....eeee....hhhhhhhhhhhh...eeee.........eee..hhhhhhhhhhhhhhhh....eeee.......hhhhhhhhhhhh....hhh.ee....hhhhhhhhhhhhhhh.......eee..hhhhhhhhhhhhhhh........eee......hhhhh.....eee.hhhhhhhhhhhhhhhhh..............eee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rk3 A  59 TGNIGVLVSRVTNPFFAGLFDAIERELHAHGYQVMITQTYDDPEAEERFLKQLKSRELDGVILASVEAPDRVMAVAKAFPGRVVVVNADVQIPGATSLVLPHYQATRDALDYLFNQGHRRFAYVSGGTISSRTQAFLDFMQAHQLLVAQDLLFGQIHTAKEGQAVGKQLASLAPNVRPDAVFTNSDEVAVGVIDSLLAADVKVPDDIAVMGYDDQPFAPFAKIPLTTVHQPVASMAAAATHELLKGLGRQVAQDTQPTLHLSLKIRQSA 333
                                    68        78        88        98       108       118       128       138       148       158       168       178       188|      204       214       224       234       244       254       264       274       284       294       304       314       324         
                                                                                                                                                           188|                                                                                                                                          
                                                                                                                                                            195
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RK3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RK3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RK3)

(-) Gene Ontology  (4, 4)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q036L9_LACP3 | Q036L9: 4rk4 4rk5 4wxe

(-) Related Entries Specified in the PDB File

4rk4 LACI FAMILY TRANSCRIPTIONAL REGULATOR FROM LACTOBACILLUS CASEI WITH BOUND GLUCOSE
4rk5 LACI FAMILY TRANSCRIPTIONAL REGULATOR FROM LACTOBACILLUS CASEI WITH BOUND SUCROSE RELATED ID: EFI-512911 RELATED DB: TARGETTRACK