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(-) Description

Title :  ACETOLACTATE SYNTHASE FROM BACILLUS SUBTILIS BOUND TO THDP - CRYSTAL FORM I
 
Authors :  B. Sommer, H. Von Moeller, M. Haack, F. Qoura, C. Langner, G. Bourenkov T. Brueck, B. Loll
Date :  09 Oct 14  (Deposition) - 22 Oct 14  (Release) - 07 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Lyase, Thdp (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Sommer, H. Von Moeller, M. Haack, F. Qoura, C. Langner, G. Bourenkov, D. Garbe, B. Loll, T. Bruck
Detailed Structure-Function Correlations Of Bacillus Subtilis Acetolactate Synthase.
Chembiochem V. 16 110 2015
PubMed-ID: 25393087  |  Reference-DOI: 10.1002/CBIC.201402541

(-) Compounds

Molecule 1 - ACETOLACTATE SYNTHASE
    Chains: A, B, C, D
    EC Number: 4.1.3.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: U712_18080
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1415167
    Strain: PY79

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1MG4Ligand/IonMAGNESIUM ION
2PG41Ligand/IonTETRAETHYLENE GLYCOL
3TPP4Ligand/IonTHIAMINE DIPHOSPHATE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:400 , HIS A:401 , GLN A:424 , LEU A:426 , GLY A:450 , ASP A:451 , GLY A:452 , GLY A:453 , ASP A:478 , THR A:480 , TYR A:481 , ASP A:482 , MET A:483 , VAL A:484 , TYR A:547 , MG A:1001 , PRO B:37 , GLU B:61 , PRO B:87 , ASN B:91 , GLN B:124BINDING SITE FOR RESIDUE TPP A 1000
2AC2SOFTWAREASP A:451 , ASP A:478 , THR A:480 , TPP A:1000BINDING SITE FOR RESIDUE MG A 1001
3AC3SOFTWAREPRO A:37 , GLU A:61 , PRO A:87 , ASN A:91 , GLN A:124 , SER B:400 , HIS B:401 , GLN B:424 , LEU B:426 , GLY B:450 , ASP B:451 , GLY B:452 , GLY B:453 , ASP B:478 , THR B:480 , TYR B:481 , ASP B:482 , MET B:483 , TYR B:547 , MG B:602BINDING SITE FOR RESIDUE TPP B 601
4AC4SOFTWAREASP B:451 , ASP B:478 , THR B:480 , TPP B:601BINDING SITE FOR RESIDUE MG B 602
5AC5SOFTWAREGLY B:162 , PRO B:191 , GLY C:162 , PRO C:191BINDING SITE FOR RESIDUE PG4 B 603
6AC6SOFTWARESER C:400 , HIS C:401 , GLN C:424 , GLY C:450 , ASP C:451 , GLY C:452 , GLY C:453 , ASP C:478 , THR C:480 , TYR C:481 , ASP C:482 , MET C:483 , VAL C:484 , TYR C:547 , MG C:1001 , HOH C:1104 , PRO D:37 , GLU D:61 , PRO D:87 , ASN D:91 , GLN D:124BINDING SITE FOR RESIDUE TPP C 1000
7AC7SOFTWAREASP C:451 , ASP C:478 , THR C:480 , TPP C:1000 , HOH C:1104BINDING SITE FOR RESIDUE MG C 1001
8AC8SOFTWAREILE C:36 , PRO C:37 , GLU C:61 , PRO C:87 , ASN C:91 , GLN C:124 , GLY D:399 , SER D:400 , HIS D:401 , GLN D:424 , LEU D:426 , GLY D:450 , ASP D:451 , GLY D:452 , GLY D:453 , ASP D:478 , THR D:480 , TYR D:481 , ASP D:482 , MET D:483 , VAL D:484 , TYR D:547 , MG D:1001BINDING SITE FOR RESIDUE TPP D 1000
9AC9SOFTWAREASP D:451 , ASP D:478 , THR D:480 , TPP D:1000BINDING SITE FOR RESIDUE MG D 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RJI)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gly A:162 -Gln A:163
2Gly B:162 -Gln B:163
3Gly C:162 -Gln C:163
4Gly D:162 -Gln D:163

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RJI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RJI)

(-) Exons   (0, 0)

(no "Exon" information available for 4RJI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:539
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...eeee.....hhhhhhhh.....eeee..hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh....eeeeeee.hhhhh........hhhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhh....eeeeeeehhhhhh..................hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhh..eee.hhhh...hhhhhh.eeee......hhhhhhhhhh.eeeee.......hhhhhh.....eeeeee.............eeee.hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.......eee..hhhhhhhhhhh.......ee.........hhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhh...........hhhhhhhhh..eeee..hhhhhhhhhhhhhhh...eeeeee....hhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rji A  15 NRGAELVVDCLVEQGVTHVFGIPGAKIDAVFDALQDKGPEIIVARHEQNAAFMAQAVGRLTGKPGVVLVTSGPGASNLATGLLTANTEGDPVVALAGNVIRADRLKRTHQSLDNAALFQPITKYSVEVQDVKNIPEAVTNAFRIASAGQAGAAFVSFPQDVVNEVTNTKNVRAVAAPKLGPAADDAISAAIAKIQTAKLPVVLVGMKGGRPEAIKAVRKLLKKVQLPFVETYQAAGTLSRDLEDQYFGRIGLFRNQPGDLLLEQADVVLTIGYDPIEYDPKFWNINGDRTIIHLDEIIADIDHAYQPDLELIGDIPSTINHIEHDAVKVEFAEREQKILSDLKQYMHEGESDRAHPLEIVKELRNAVDDHVTVTCDIGSHAIWMSRYFRSYEPLTLMISNGMQTLGVALPWAIGASLVKPGEKVVSVSGDGGFLFSAMELETAVRLKAPIVHIVWNDSTYDMVAFQQLKKYNRTSAVDFGNIDIVKYAESFGATGLRVESPDQLADVLRQGMNAEGPVIIDVPVDYSDNINLASDKLPK 560
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364|      381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551         
                                                                                                                                                                                                                                                                                                                                                                                       364|                                                                                                                                                                                            
                                                                                                                                                                                                                                                                                                                                                                                        372                                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:552
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...eeee.....hhhhhhhh.....eeee..hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh...eeeeeee.hhhhh........hhhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhh....eeeeeeehhhhhh..................hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhh..eee.hhhh....hhhhh.eeee......hhhhhhhhhh.eeeee.......hhhhhh.....eeeeee.............eeee.hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhh.......eee..hhhhhhhhhhh.......ee.........hhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhh.............hhhhhhhhh..eeee.....hhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4rji B  15 NRGAELVVDCLVEQGVTHVFGIPGAKIDAVFDALQDKGPEIIVARHEQNAAFMAQAVGRLTGKPGVVLVTSGPGASNLATGLLTANTEGDPVVALAGNVIRADRLKRTHQSLDNAALFQPITKYSVEVQDVKNIPEAVTNAFRIASAGQAGAAFVSFPQDVVNEVTNTKNVRAVAAPKLGPAADDAISAAIAKIQTAKLPVVLVGMKGGRPEAIKAVRKLLKKVQLPFVETYQAAGTLSRDLEDQYFGRIGLFRNQPGDLLLEQADVVLTIGYDPIEYDPKFWNINGDRTIIHLDEIIADIDHAYQPDLELIGDIPSTINHIEHDAVKVEFAEREQKILSDLKQYMHEGEQVPADWKSDRAHPLEIVKELRNAVDDHVTVTCDIGSHAIWMSRYFRSYEPLTLMISNGMQTLGVALPWAIGASLVKPGEKVVSVSGDGGFLFSAMELETAVRLKAPIVHIVWNDSTYDMVAFQQLKKYNRTSAVDFGNIDIVKYAESFGATGLRVESPDQLADVLRQGMNAEGPVIIDVPVDYSDNINLASDKLPKEFGELM 566
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564  


Chain C from PDB  Type:PROTEIN  Length:555
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...eeee.....hhhhhhhh.....eeee..hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh...eeeeeee.hhhhh........hhhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhh....eeeeeeehhhhhh..................hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhh..eee.hhhh...hhhhhh.eeee......hhhhhhhhhh.eeeee.......hhhhhh.....eeeeee.............eeee.hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh.....eee..hhhhhhhhhhh.......ee.........hhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhh..........hhhhhhhhh..eeee..hhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rji C  14 KNRGAELVVDCLVEQGVTHVFGIPGAKIDAVFDALQDKGPEIIVARHEQNAAFMAQAVGRLTGKPGVVLVTSGPGASNLATGLLTANTEGDPVVALAGNVIRADRLKRTHQSLDNAALFQPITKYSVEVQDVKNIPEAVTNAFRIASAGQAGAAFVSFPQDVVNEVTNTKNVRAVAAPKLGPAADDAISAAIAKIQTAKLPVVLVGMKGGRPEAIKAVRKLLKKVQLPFVETYQAAGTLSRDLEDQYFGRIGLFRNQPGDLLLEQADVVLTIGYDPIEYDPKFWNINGDRTIIHLDEIIADIDHAYQPDLELIGDIPSTINHIEHDAVKVEFAEREQKILSDLKQYMHEGEQVPADWKSDRAHPLEIVKELRNAVDDHVTVTCDIGSHAIWMSRYFRSYEPLTLMISNGMQTLGVALPWAIGASLVKPGEKVVSVSGDGGFLFSAMELETAVRLKAPIVHIVWNDSTYDMVAFQQLKKYNRTSAVDFGNIDIVKYAESFGATGLRVESPDQLADVLRQGMNAEGPVIIDVPVDYSDNINLASDKLPKEFGELMKT 568
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563     


Chain D from PDB  Type:PROTEIN  Length:555
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...eeee.....hhhhhhhh.....eeee..hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh...eeeeeee.hhhhh........hhhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhh....eeeeeeehhhhhh..................hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhh..eee.hhhh...hhhhhh.eeee......hhhhhhhhhh.eeeee..hhhhhhhhhhh.....eeeeee.............eeee.hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhh.....eeee..hhhhhhhhhhh.......ee.........hhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhh...........hhhhhhhhh..eeee..hhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rji D  14 KNRGAELVVDCLVEQGVTHVFGIPGAKIDAVFDALQDKGPEIIVARHEQNAAFMAQAVGRLTGKPGVVLVTSGPGASNLATGLLTANTEGDPVVALAGNVIRADRLKRTHQSLDNAALFQPITKYSVEVQDVKNIPEAVTNAFRIASAGQAGAAFVSFPQDVVNEVTNTKNVRAVAAPKLGPAADDAISAAIAKIQTAKLPVVLVGMKGGRPEAIKAVRKLLKKVQLPFVETYQAAGTLSRDLEDQYFGRIGLFRNQPGDLLLEQADVVLTIGYDPIEYDPKFWNINGDRTIIHLDEIIADIDHAYQPDLELIGDIPSTINHIEHDAVKVEFAEREQKILSDLKQYMHEGEQVPADWKSDRAHPLEIVKELRNAVDDHVTVTCDIGSHAIWMSRYFRSYEPLTLMISNGMQTLGVALPWAIGASLVKPGEKVVSVSGDGGFLFSAMELETAVRLKAPIVHIVWNDSTYDMVAFQQLKKYNRTSAVDFGNIDIVKYAESFGATGLRVESPDQLADVLRQGMNAEGPVIIDVPVDYSDNINLASDKLPKEFGELMKT 568
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RJI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RJI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RJI)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4RJI)

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  Cis Peptide Bonds
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  4rji
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 Related Entries

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(-) Related Entries Specified in the PDB File

1ozf 1ozg 1ozh 4rjj 4rjk