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(-) Description

Title :  CRYSTAL STRUCTURE OF UBIX MUTANT V47S FROM COLWELLIA PSYCHRERYTHRAEA 34H
 
Authors :  H. Do, S. J. Kim, C. W. Lee, H. -W. Kim, H. H. Park, H. M. Kim, H. Park, H. J. Pa J. H. Lee
Date :  02 Oct 14  (Deposition) - 18 Feb 15  (Release) - 18 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.76
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (12x)
Keywords :  Rossmann Fold, Decarboxylation, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Do, S. J. Kim, C. W. Lee, H. W. Kim, H. H. Park, H. M. Kim, H. Park, H. Park J. H. Lee
Crystal Structure Of Ubix, An Aromatic Acid Decarboxylase From The Psychrophilic Bacterium Colwellia Psychrerythraea That Undergoes Fmn-Induced Conformational Changes.
Sci Rep V. 5 8196 2015
PubMed-ID: 25645665  |  Reference-DOI: 10.1038/SREP08196

(-) Compounds

Molecule 1 - 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE
    Chains: A
    EC Number: 4.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: UBIX, CPS_0408
    Mutation: YES
    Organism Scientific: COLWELLIA PSYCHRERYTHRAEA 34H
    Organism Taxid: 167879

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (12x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 1 (1, 24)
No.NameCountTypeFull Name
1SO424Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:93 , SER A:94 , ARG A:124 , LYS A:131 , THR A:143 , TYR A:171 , ARG A:187 , HOH A:424BINDING SITE FOR RESIDUE SO4 A 301
2AC2SOFTWARETHR A:14 , GLY A:15 , SER A:41 , ALA A:43 , SER A:106 , THR A:109 , HOH A:438 , HOH A:448BINDING SITE FOR RESIDUE SO4 A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RHF)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Cys A:103 -Pro A:104
2Thr A:143 -Pro A:144

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RHF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RHF)

(-) Exons   (0, 0)

(no "Exon" information available for 4RHF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....hhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhh.....eee.......hhhhh......eeeeeeehhhhhhhhhhh...hhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhh..ee............hhhhhhhhhhhhhhhhh..hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rhf A   4 DFNGKITLAITGASGASYAMRLIECLIAANYQLYILCSSAGRISLDTEVGVKIPSSPDAASKFLTEKYQAKDQQITVFGKEQWFSPVASGSSAPKQMVVCPCSTGTMAAICHGMSDNLIERAADVVIKERGQLILMVRETPFSTLHLQNMLSLSQQGVTIMPASPGFYHKVETIEDLIDFMVGRVLDHLGIEQDIMPRWG 203
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RHF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RHF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RHF)

(-) Gene Ontology  (8, 8)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q489U8_COLP3 | Q489U8: 4rhe

(-) Related Entries Specified in the PDB File

4rhe CRYSTAL STRUCTURE OF WILD TYPE UBIX