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(-) Description

Title :  STRUCTURE OF GLNR-DNA COMPLEX
 
Authors :  M. A. Schumacher
Date :  19 Aug 14  (Deposition) - 04 Mar 15  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.57
Chains :  Asym./Biol. Unit :  A,B,D,E
Keywords :  Tnra/Glnr Family, B. Subtilis, Nitrogen Homeostasis, New Member, Tnra/Glnr Dna-Binding Family Of Winged-Hth With C-Terminal Inducer/Sensor Domain, Transcription, Dna, Gs-Q, Nucleoid, Transcription Regulator-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Schumacher, N. B. Chinnam, B. Cuthbert, N. K. Tonthat, T. Whitfil
Structures Of Regulatory Machinery Reveal Novel Molecular Mechanisms Controlling B. Subtilis Nitrogen Homeostasis.
Genes Dev. V. 29 451 2015
PubMed-ID: 25691471  |  Reference-DOI: 10.1101/GAD.254714.114

(-) Compounds

Molecule 1 - HTH-TYPE TRANSCRIPTIONAL REGULATOR GLNR
    Chains: B, A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GLNR, BSU17450
    Organism Scientific: BACILLUS SUBTILIS SUBSP. SUBTILIS
    Organism Taxid: 224308
    Strain: 168
 
Molecule 2 - DNA (5'-D(*AP*TP*TP*CP*TP*GP*AP*CP*A)-3')
    Chains: D
    Engineered: YES
    Organism Scientific: SYNTHETIC DNA
    Organism Taxid: 32630
    Other Details: COGNATE DNA
    Synthetic: YES
 
Molecule 3 - DNA (5'-D(*TP*GP*TP*CP*AP*GP*TP*A)-3')
    Chains: E
    Engineered: YES
    Organism Scientific: SYNTHETIC DNA
    Organism Taxid: 32630
    Other Details: COGNATE DNA (COMPLEMENT TO 2)
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CXS1Ligand/Ion3-CYCLOHEXYL-1-PROPYLSULFONIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:14 , GLU A:33 , GLY A:44 , ASN A:45 , ARG A:46 , ARG A:47 , HOH A:207BINDING SITE FOR RESIDUE CXS A 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R4E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4R4E)

 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:83
                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh..eehhhhhhhhh.hhhhhhhhhhh.....ee.....eeehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                  4r4e A  1 MSDNIRRSMPLFPIGIVMQLTELSARQIRYYEENGLIFPARTEGNRRLFSFHDVDKLLEIKHLIEQGVNMAGIKQILAKAEAE 83
                                    10        20        30        40        50        60        70        80   


Chain B from PDB  Type:PROTEIN  Length:84
                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhh...eehhhhhhhhh.hhhhhhhhhhh.....ee.....eeehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                  4r4e B  1 MSDNIRRSMPLFPIGIVMQLTELSARQIRYYEENGLIFPARTEGNRRLFSFHDVDKLLEIKHLIEQGVNMAGIKQILAKAEAEP 84
                                    10        20        30        40        50        60        70        80    


Chain D from PDB  Type:DNA  Length:9
                                        
                  4r4e D  9 ATTCTGACA 17


Chain E from PDB  Type:DNA  Length:8
                                       
                  4r4e E  2 TGTCAGTA  9
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R4E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R4E)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (3, 3)

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