4QXX - JenaLib

Title :   STRUCTURE OF THE AMYLOID FORMING PEPTIDE GNLVS (RESIDUES 26-30) FROM THE EOSINOPHIL MAJOR BASIC PROTEIN (EMBP)

Authors :   A. B. Soriaga, A. Soragni, M. R. Sawaya, D. Eisenberg

Date :   22 Jul 14 (Deposition) - 18 Mar 15 (Release) - 08 Apr 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.45

Chains :   Asym. Unit : Z
Biol. Unit 1: Z  (6x)

Keywords :   Amyloid-Like Protofibril, Protein Fibril (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Soragni, S. Yousefi, C. Stoeckle, A. B. Soriaga, M. R. Sawaya, E. Kozlowski, I. Schmid, S. Radonjic-Hoesli, S. Boutet, G. J. Williams, M. Messerschmidt, M. M. Seibert, D. Cascio, N. A. Zatsepin, M. Burghammer, C. Riekel, J. P. Colletier, R. Riek, D. S. Eisenberg, H. U. Simon
Toxicity Of Eosinophil Mbp Is Repressed By Intracellular Crystallization And Promoted By Extracellular Aggregation.
Mol. Cell V. 57 1011 2015
PubMed-ID: 25728769 | Reference-DOI: 10.1016/J.MOLCEL.2015.01.026

Compounds

Molecule 1 - BONE MARROW PROTEOGLYCAN
	Chains	:	Z
	Engineered	:	YES
	Fragment	:	GNLVS PEPTIDE (UNP RESIDUES 131-135)
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	BMPG, PROTEOGLYCAN 2, EOSINOPHIL GRANULE MAJOR BASIC PROTEIN, EMBP, MBP, PREGNANCY-ASSOCIATED MAJOR BASIC PROTEIN
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

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Chain Z from PDB  Type:PROTEIN  Length:5
                                   
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                   4qxx Z 1 GNLVS 5

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (13, 13)

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