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(-) Description

Title :  1.28 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF PREDICTED ACYLTRANSFERASE WITH ACYL-COA N-ACYLTRANSFERASE DOMAIN (YPEA) FROM ESCHERICHIA COLI STR. K-12 SUBSTR. MG1655
 
Authors :  A. S. Halavaty, E. V. Filippova, G. Minasov, K. J. Flores, I. Dubrovska, L. Shuvalova, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date :  11 Jul 14  (Deposition) - 23 Jul 14  (Release) - 23 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.28
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (4x)
Keywords :  Predicted Acyltransferase, Acyl-Coa N-Acyltransferase Domain, Gnat Acetyltransferase, Csgid, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Niaid, National Institute Of Allergy And Infectious Diseases, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Halavaty, E. V. Filippova, G. Minasov, K. J. Flores, I. Dubrovska L. Shuvalova, W. F. Anderson
1. 28 Angstrom Resolution Crystal Structure Of Predicted Acyltransferase With Acyl-Coa N-Acyltransferase Domain (Ypea) From Escherichia Coli Str. K-12 Substr. Mg1655
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ACETYLTRANSFERASE YPEA
    Chains: A, B
    EC Number: 2.3.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG28
    Expression System Strain: BL21(DE3) MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: B2434, JW2427, YPEA
    Organism Scientific: ESCHERICHIA COLI STR. K-12 SUBSTR. MG1655
    Organism Taxid: 511145
    Synonym: PREDICTED ACYLTRANSFERASE WITH ACYL-COA N-ACYLTRANSFERASE DOMAIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (4x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2PO42Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 20)
No.NameCountTypeFull Name
1EDO12Ligand/Ion1,2-ETHANEDIOL
2PO48Ligand/IonPHOSPHATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:66 , LYS A:102 , HOH A:312 , HOH A:322 , HOH A:370 , HOH A:405 , HOH A:410 , HOH A:483 , HOH A:489 , TRP B:27 , ASN B:28 , HOH B:394BINDING SITE FOR RESIDUE PO4 A 201
2AC2SOFTWARETRP A:27 , ASN A:28 , HOH A:318 , ARG B:66 , LYS B:102 , HOH B:349 , HOH B:360 , HOH B:412 , HOH B:433 , HOH B:440 , HOH B:443BINDING SITE FOR RESIDUE PO4 B 201
3AC3SOFTWAREHIS A:40 , HOH A:328 , HIS B:40 , ASP B:41 , HOH B:309 , HOH B:311 , HOH B:392 , HOH B:408BINDING SITE FOR RESIDUE EDO B 202
4AC4SOFTWARETYR B:70 , TYR B:71 , HOH B:352 , HOH B:389 , HOH B:394 , HOH B:475 , HOH B:554BINDING SITE FOR RESIDUE EDO B 203
5AC5SOFTWAREGLY B:80 , ARG B:81 , GLY B:82 , HOH B:427 , HOH B:563BINDING SITE FOR RESIDUE EDO B 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QUS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QUS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QUS)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...eeeeee..eeeeeeeeee....eeeeeeee.......hhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhh..ee..eeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qus A   1 MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSLFLVAEVNGDVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDMVLGMYERLGYEHADVLSLGKRLIEDEE 140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140


Chain B from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...eeeeee..eeeeeeeeee....eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..ee...eeeeee..hhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qus B   1 MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSLFLVAEVNGDVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDMVLGMYERLGYEHADVLSLGKRLIEDEEYAGENLYFQ 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QUS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QUS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QUS)

(-) Gene Ontology  (7, 7)

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  YPEA_ECOLI | P76539
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 Related Entries

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        YPEA_ECOLI | P76539: 4qvt

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