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(-) Description

Title :  2.35 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF HYPOXANTHINE-GUANINE-XANTHINE PHOSPHORIBOSYLTRANSFERASE FROM LEPTOSPIRA INTERROGANS SEROVAR COPENHAGENI STR. FIOCRUZ L1-130
 
Authors :  A. S. Halavaty, G. Minasov, I. Dubrovska, K. J. Flores, L. Shuvalova, W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date :  01 Jul 14  (Deposition) - 16 Jul 14  (Release) - 16 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase, Leptospira Interrogans Serovar Copenhageni Str. Fiocruz L1-130, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Glycosyltransferase, Transferase, Csgid, Niaid, National Institute Of Allergy And Infectious Diseases, Purine Salvage Pathway (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Halavaty, G. Minasov, I. Dubrovska, K. J. Flores, L. Shuvalova, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
2. 35 Angstrom Resolution Crystal Structure Of Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase Fro Leptospira Interrogans Serovar Copenhageni Str. Fiocruz L1-130
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOXANTHINE-GUANINE-XANTHINE PHOSPHORIBOSYLTRANSFERASE
    Chains: A, B
    EC Number: 2.4.2.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG53
    Expression System Strain: BL21(DE3)-MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: HPT, LA_4295, LIC_13438
    Organism Scientific: LEPTOSPIRA INTERROGANS SEROVAR COPENHAGENI
    Organism Taxid: 267671
    Strain: FIOCRUZ L1-130

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric/Biological Unit (2, 11)
No.NameCountTypeFull Name
1PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
2SO48Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:20 , LYS A:21 , SER A:24 , HOH A:306 , HOH A:361 , HOH A:362 , PEG B:205BINDING SITE FOR RESIDUE SO4 A 201
02AC2SOFTWARELYS A:45 , GLY A:46 , ARG A:166BINDING SITE FOR RESIDUE SO4 A 202
03AC3SOFTWAREPHE A:60 , SER A:61 , LYS A:80 , ARG B:164BINDING SITE FOR RESIDUE SO4 A 203
04AC4SOFTWARELEU A:103 , ASP A:104 , THR A:105 , GLY A:106 , PHE A:107BINDING SITE FOR RESIDUE SO4 A 204
05AC5SOFTWARELYS A:45 , ARG A:70 , GLY A:163 , ARG A:166 , HOH A:344 , HOH A:360BINDING SITE FOR RESIDUE PEG A 205
06AC6SOFTWARETYR B:111 , ARG B:114BINDING SITE FOR RESIDUE SO4 B 201
07AC7SOFTWAREARG A:164 , TYR A:165 , PHE B:60 , SER B:61BINDING SITE FOR RESIDUE SO4 B 202
08AC8SOFTWARELYS B:45 , GLY B:46 , ARG B:166BINDING SITE FOR RESIDUE SO4 B 203
09AC9SOFTWARELEU B:103 , ASP B:104 , THR B:105 , GLY B:106 , PHE B:107 , HOH B:346 , HOH B:371BINDING SITE FOR RESIDUE SO4 B 204
10BC1SOFTWAREARG A:12 , PHE A:13 , ASP A:17 , TRP A:147 , SO4 A:201 , HOH A:306 , GLU B:31 , ASP B:32 , LYS B:143BINDING SITE FOR RESIDUE PEG B 205
11BC2SOFTWAREASP B:17 , GLU B:82 , TRP B:147BINDING SITE FOR RESIDUE PEG B 206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QRI)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Leu A:44 -Lys A:45
2Leu B:44 -Lys B:45

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QRI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QRI)

(-) Exons   (0, 0)

(no "Exon" information available for 4QRI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeehhhhhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhh.....eeeeeee....eee.........eeeeeeeee..hhhhhhhhhhhhh....eeeeeeeeee......eeeeee....ee...............eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qri A   6 SDILHPRFSREDISQKVKSLALQISEDYKKLNPIFICVLKGGVYFFTDLTREIPFSVEINFVQARKIELLKDIDIDLSDRHVIIVEDILDTGFTLQYLVRHIFTRNPASLEIVTLLLKEEFPVKYIGWRIPDEFLVGYGLDFDGRYRNLPDIHVLEP 176
                                    15        25        35        45        55        65    ||  84        94       104       114       124       139       149       159       169       
                                                                                           70|                                                  133|                                     
                                                                                            80                                                   139                                     


Chain B from PDB  Type:PROTEIN  Length:155
                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeehhhhhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhh.....eeeeee...............eeeeeeeee..hhhhhhhhhhhhh....eeeeeeeeee.....eeeeee....ee...............eeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qri B   6 SDILHPRFSREDISQKVKSLALQISEDYKKLNPIFICVLKGGVYFFTDLTREIPFSVEINFVQAIELLKDIDIDLSDRHVIIVEDILDTGFTLQYLVRHIFTRNPASLEIVTLLLKEFPVKYIGWRIPDEFLVGYGLDFDGRYRNLPDIHVLEPG 177
                                    15        25        35        45        55        65   ||   86        96       106       116       126      |142       152       162       172     
                                                                                          69|                                                 133|                                     
                                                                                           81                                                  140
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QRI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QRI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QRI)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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