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(-) Description

Title :  CRYSTAL STRUCTURE OF PNEUMOLYSIN FROM STREPTOCOCCUS PNEUMONIAE, IN COMPLEX WITH MANNOSE AS A COMPONENT OF CELL MEMBRANE
 
Authors :  S. A. Park, K. S. Lee
Date :  27 Jun 14  (Deposition) - 22 Jul 15  (Release) - 22 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Ply, Cholesterol-Dependent Cytolysin, Cholesterol/Mannose Binding, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. A. Park, K. S. Lee
Crystal Structure Of Pneumolysin From Streptococcus Pneumoniae, In Complex With Mannose As A Component Of Cell Membrane
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PNEUMOLYSIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PLY
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 1313

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MAN2Ligand/IonALPHA-D-MANNOSE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:405 , ALA A:406 , HIS A:407 , HOH A:604 , HOH A:626BINDING SITE FOR RESIDUE MAN A 501
2AC2SOFTWARESER A:-1 , HIS A:0 , MET A:1 , VAL A:372 , ASP A:403 , CYS A:428 , TRP A:435 , TRP A:436 , TYR A:461BINDING SITE FOR RESIDUE MAN A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QQQ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Val A:144 -Pro A:145
2Ala A:406 -His A:407

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QQQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QQQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4QQQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:PROTEIN  Length:483
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhh...hhhhhheee..........eeeee..eeeeeeeeeeeeeeee.eee.............eee.hhhhhh............eeeee......hhh.eeee...hhhhhhhhhhhhhhhhhhh.........eeeeeeee..hhhhhhhhhh..hhhhhh.....hhhhhh...eeeeeeeeeeeeeeee....hhhhhh....hhhhhhhh.......eeeeeeeeeeeeeeeeeee......hhhhhhhhhhh......hhhhhhhh.eeeeeeee......eee....hhhhhhhhhhhh.........eeeeeeeee........eeeeeeeeeeeeeeee.eeeeeee.....eeeeeeeeeeeee...eeeeeeee...........eeeeeee...eeeeeeeeeeeeee..eeeeeeeeee......eeeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qqq A -12 HHHSSGLVPRGSHMANKAVNDFILAMNYDKKKLLTHQGESIENRFIKEGNQLPDEFVVIERKKRSLSTNTSDISVTATNDSRLYPGALLVVDETLLENNPTLLAVDRAPMTYSIDLPGLASSDSFLQVEDPSNSSVRGAVNDLLAKWHQDYGQVNNVPARMQYEKITAHSMEQLKVKFGSDFEKTGNSLDIDFNSVHSGEKQIQIVNFKQIYYTVSVDAVKNPGDVFQDTVTVEDLKQRGISAERPLVYISSVAYGRQVYLKLETTSKSDEVEAAFEALIKGVKVAPQTEWKQILDNTEVKAVILGGDPSSGARVVTGKVDMVEDLIQEGSRFTADHPGLPISYTTSFLRDNVVATFQNSTDYVETKVTAYRNGDLLLDHSGAYVAQYYITWNELSYDHQGKEVLTPKAWDRNGQDLTAHFTTSIPLKGNVRNLSVKIRECTGLAWEWWRTVYEKTDLPLVRKRTISIWGTTLYPQVEDKVEN 470
                                    -3         7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QQQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QQQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QQQ)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q2XU26_STREE | Q2XU26: 4qqa

(-) Related Entries Specified in the PDB File

4qqa THE SAME PROTEIN COMPLEXED WITH MANNOSE