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(-) Description

Title :  CRYSTAL STRUCTURE OF RFXANK ANKYRIN REPEATS IN COMPLEX WITH RFX7
 
Authors :  W. Tempel, C. Xu, A. Dong, Y. Li, C. Bountra, C. H. Arrowsmith, A. M. Edwar Structural Genomics Consortium (Sgc)
Date :  27 Jun 14  (Deposition) - 06 Aug 14  (Release) - 06 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.78
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Structural Genomics, Ankyrin Repeats, Structural Genomics Consortium, Sgc, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  W. Tempel, C. Xu, A. Dong, Y. Li, C. Bountra, C. H. Arrowsmith, A. M. Edwards, J. Min
Crystal Structure Of Rfxank Ankyrin Repeats In Complex With Rfx7
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA-BINDING PROTEIN RFXANK
    ChainsA, C
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPET28-MHL
    Expression System StrainBL21-V2R-PRARE2
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 90-260
    GeneRFXANK, ANKRA1, RFXB
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymANKYRIN REPEAT FAMILY A PROTEIN 1, REGULATORY FACTOR X SUBUNIT B, RFX-B, REGULATORY FACTOR X-ASSOCIATED ANKYRIN-CONTAINING PROTEIN
 
Molecule 2 - DNA-BINDING PROTEIN RFX7
    ChainsB, D
    EngineeredYES
    FragmentUNP RESIDUES 85-101
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymREGULATORY FACTOR X 7, REGULATORY FACTOR X DOMAIN-CONTAINING PROTEIN 2
    SyntheticYES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 22)

Asymmetric Unit (1, 22)
No.NameCountTypeFull Name
1UNX22Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (1, 13)
No.NameCountTypeFull Name
1UNX13Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 2 (1, 9)
No.NameCountTypeFull Name
1UNX9Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (0, 0)

(no "Site" information available for 4QQM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QQM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QQM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QQM)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4QQM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhh.hhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhhh...........hhhhhhhhh.hhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qqm A  91 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQS 252
                                   100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  

Chain B from PDB  Type:PROTEIN  Length:14
                                              
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author .............. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 4qqm B  86 AFVHMPTLPNLDFH  99
                                    95    

Chain C from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhh.hhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh.hhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qqm C  91 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQS 252
                                   100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  

Chain D from PDB  Type:PROTEIN  Length:16
                                                
               SCOP domains ---------------- SCOP domains
               CATH domains ---------------- CATH domains
               Pfam domains ---------------- Pfam domains
         Sec.struct. author ................ Sec.struct. author
                 SAPs(SNPs) ---------------- SAPs(SNPs)
                    PROSITE ---------------- PROSITE
                 Transcript ---------------- Transcript
                 4qqm D  86 AFVHMPTLPNLDFHKT 101
                                    95      

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QQM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QQM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QQM)

(-) Gene Ontology  (14, 19)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RFX7_HUMAN | Q2KHR24qqi
        RFXK_HUMAN | O145933uxg 3v30

(-) Related Entries Specified in the PDB File

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