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(-) Description

Title :  CRYSTAL STRUCTURE OF MAPK FROM LEISHMANIA DONOVANI, LDBPK_331470
 
Authors :  A. K. Wernimont, P. Loppnau, J. R. Walker, M. Mangos, M. El Bakkouri, C. H. Arrowsmith, A. M. Edwards, C. Bountra, R. Hui, M. Amani, Structur Genomics Consortium (Sgc)
Date :  18 Jun 14  (Deposition) - 09 Jul 14  (Release) - 09 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.26
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A (1x),B (1x)
Keywords :  Structural Genomics, Structural Genomics Consortium, Sgc, Leishmania, Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Wernimont, P. Loppnau, J. R. Walker, M. Mangos, M. El Bakkouri, C. H. Arrowsmith, A. M. Edwards, C. Bountra, R. Hui, M. Amani
Crystal Structure Of Mapk From Leishmania Donovani, Ldbpk_331470
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MITOGEN ACTIVATED PROTEIN KINASE, PUTATIVE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15MLH
    Expression System Strain: BL21DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: LDBK_331470, LDBPK_331470
    Organism Scientific: LEISHMANIA DONOVANI
    Organism Taxid: 981087
    Strain: BPK282A1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2GOL1Ligand/IonGLYCEROL
3MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2GOL-1Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2GOL1Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2GOL1Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:154 , ASP A:167 , ANP A:402 , HOH A:564 , HOH A:565BINDING SITE FOR RESIDUE MG A 401
2AC2SOFTWAREILE A:27 , GLY A:30 , VAL A:35 , ALA A:49 , LYS A:51 , GLU A:70 , ILE A:83 , MET A:104 , ASP A:105 , ILE A:106 , MET A:107 , ASP A:110 , ALA A:153 , ASN A:154 , LEU A:156 , ASP A:167 , MG A:401 , HOH A:547 , HOH A:561 , HOH A:565 , HOH A:591 , HOH A:639 , HOH A:654BINDING SITE FOR RESIDUE ANP A 402
3AC3SOFTWAREARG B:148 , MET B:181 , ARG B:191BINDING SITE FOR RESIDUE GOL B 401
4AC4SOFTWAREASN B:154 , ASP B:167 , ANP B:403 , HOH B:557 , HOH B:569BINDING SITE FOR RESIDUE MG B 402
5AC5SOFTWAREGLY B:30 , SER B:31 , VAL B:35 , ALA B:49 , LYS B:51 , GLU B:70 , ILE B:83 , ASP B:105 , MET B:107 , ASP B:110 , ALA B:153 , ASN B:154 , LEU B:156 , ASP B:167 , MG B:402 , HOH B:547 , HOH B:561 , HOH B:569 , HOH B:605BINDING SITE FOR RESIDUE ANP B 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QNY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QNY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QNY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QNY)

(-) Exons   (0, 0)

(no "Exon" information available for 4QNY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh....eeeeeeeeee..eeeeeeee.....eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhh.......eeeee..........eeeeee...eehhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee...............hhhhhh......hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhh......hhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhh.............hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qny A   4 TKSLAELQAEVCRLDDRYLLERIIGAGSYGVVIRARDTKSDNRLVAMKRVNKEIFEEVILAKRILREIKLLAHFNDDNIIGLRNILTPEDPENFDHFYIVMDIMETDLKQVLRSGQELTEAHIQFFIYQALRALHIIHSAGVIHRDITPANILVNTNCDLKICDFGLAKEEGEYMTDYVTMRWYRAPELVMEDKDYSAQIDVWGIGCILGELLGSRPLFQGKDRVNQLDKIVDVIGTPSEEDINSVGSSAAQKYLKKKSHRPQADWRQRYPTASPEALDLLRHMLVFNPKRRITVLQAMRHPFLEQLHDDYALFRFDTIVDVKRAIYEESVKF 350
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173||     186       196       206       216       226       236       246       256       266       276       286       296       306       316|     |337       347   
                                                                                                                                                                                                    174|                                                                                                                                       316|   329|               
                                                                                                                                                                                                     178                                                                                                                                        323    335               


Chain B from PDB  Type:PROTEIN  Length:339
                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh....eeeeeeeee....eeeeeee.hhh.eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhh.......eeeee...hhhhh..eeeeee...eehhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee................hhhhhh......hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhh......hhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhh...hhhhh.........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qny B   4 TKSLAELQAEVCRLDDRYLLERIIGAGSYGVVIRARDTKSDNRLVAMKRVNKEIFEEVILAKRILREIKLLAHFNDDNIIGLRNILTPEDPENFDHFYIVMDIMETDLKQVLRSGQELTEAHIQFFIYQALRALHIIHSAGVIHRDITPANILVNTNCDLKICDFGLAKEENDQYMTDYVTMRWYRAPELVMEDKDYSAQIDVWGIGCILGELLGSRPLFQGKDRVNQLDKIVDVIGTPSEEDINSVGSSAAQKYLKKKSHRPQADWRQRYPTASPEALDLLRHMLVFNPKRRITVLQAMRHPFLEQLHDDADDYALFRFDEKTIVDVKRAIYEESVKF 350
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173   ||  185       195       205       215       225       235       245       255       265       275       285       295       305       315   ||  328 ||    341         
                                                                                                                                                                                                       177|                                                                                                                                        319|    330|                
                                                                                                                                                                                                        180                                                                                                                                         323     334
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QNY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QNY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QNY)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)

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