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(-) Description

Title :  CRYSTAL STRUCTURE OF NATIVE ARA127N, A GH127 BETA-L-ARABINOFURANOSIDASE FROM GEOBACILLUS STEAROTHERMOPHILUS T6
 
Authors :  S. Lansky, R. Salama, R. Dann, I. Shner, B. Manjasetty, H. Belrhali, Y. S G. Shoham
Date :  05 Jun 14  (Deposition) - 10 Jun 15  (Release) - 10 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.29
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Glycoside Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Lansky, R. Salama, R. Dann, I. Shner, B. Manjasetty, H. Belrhali, Y. Shoham, G. Shoham
Crystal Structure Of Native Ara127N, A Gh127 Beta-L-Arabinofuranosidase From Geobacillus Stearothermophilus T6
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GH127 BETA-L-ARABINOFURANOSIDASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ARAN
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422
    Strain: T6
    Synonym: ARA127N

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 11)

Asymmetric/Biological Unit (1, 11)
No.NameCountTypeFull Name
1ACT11Ligand/IonACETATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:136 , HIS A:185 , CYS A:329 , ALA A:405 , HOH A:871 , HOH A:1053BINDING SITE FOR RESIDUE ACT A 701
02AC2SOFTWAREGLU A:27 , PRO A:30 , TYR A:31BINDING SITE FOR RESIDUE ACT A 702
03AC3SOFTWARETYR A:82 , LYS A:194 , ARG A:339 , HIS A:420 , HOH A:1032 , HOH A:1078BINDING SITE FOR RESIDUE ACT A 703
04AC4SOFTWAREGLN A:32 , TRP A:401 , PHE A:402BINDING SITE FOR RESIDUE ACT A 704
05AC5SOFTWAREARG A:613BINDING SITE FOR RESIDUE ACT A 705
06AC6SOFTWAREARG A:339 , ARG A:340 , GLU A:343 , HOH A:895BINDING SITE FOR RESIDUE ACT A 706
07AC7SOFTWARETRP A:484 , ARG B:608BINDING SITE FOR RESIDUE ACT B 701
08AC8SOFTWAREARG A:538 , ALA A:539 , ALA A:541 , LYS B:543 , ASN B:640 , HOH B:804BINDING SITE FOR RESIDUE ACT B 702
09AC9SOFTWARETYR B:136 , HIS B:185 , ALA B:405 , HOH B:921 , HOH B:1034BINDING SITE FOR RESIDUE ACT B 703
10BC1SOFTWAREARG B:339 , ARG B:340 , GLU B:343 , HOH B:865BINDING SITE FOR RESIDUE ACT B 705

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:329 -A:406
2B:329 -B:406

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gln A:218 -Pro A:219
2Tyr A:457 -Pro A:458
3Gln B:218 -Pro B:219
4Tyr B:457 -Pro B:458

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QJY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QJY)

(-) Exons   (0, 0)

(no "Exon" information available for 4QJY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:637
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhh............hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.......hhhhhh............hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.........hhhhhhh...hhhhh....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............ee.............hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhh.............eehhhhhhhhhhh..............hhhhhhhhhhhhhhhheee...eeee.....eeeeeee..eeeeeeeee......eeeeeeee...eeeeeeee........eeee..ee..hhh.ee..eeeeeeee...eeeeee....eeee.....hhhhh.eeeeee..eeeeeehhhhh..............eeeee......eeeeeeeeeee.hhhhh..........eeeeeeeeee.hhh.......ee..ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qjy A   6 VATNVNLKDQFWKRYIDVVRHEVIPYQWEALNDRIPDAEPSHAIENFRIAAGESDGEFYGMVFQDSDVAKWLEAVAYLLETKRDPELEKLADDVIELLGRAQQPDGYLNTYYTIKEPGKRWMNLRDNHELYCAGHLIEAAVAYFRATGKRRFLDIMCKYADYIGTVFGRGEGQIPGYDGHQEIELALLKLYEVTGNENYLKLSQYFIDQRGQQPYYFDQEKEARGETEPFWYDGGYRYHQAHIPVREQKQAVGHAVRALYMYTAMAGLAAKMGDESLKQACQTLWENVTKRQMYITGGVGSSAFGESFTFDFDLPNDTAYAETCASIALVFWTRRMLELEMDGKYADVMERALYNGTISGMDLDGKKFFYVNPLEVWPKACERHDKRHVKPVRQKWFSCACCPPNLARLIASIGHYIYLQTSDALFVHLYVGSDIQTEIDGRSVKIMQETNYPWDGTVRLTVSPESAGEFTLGLRIPGWCRGAEVTINGEKVDIVPLIKKGYAYIRRVWQQGDEVKLYFPMPVERIKAHPQVRANAGKVALQRGPIVYCLEEVDNGPNLANLFLPRDAKLEAHFEPDLLEGVVVITGIAERVDESAWNDELYRPIEPRTYKVPFRAIPYYAWCNRGEGEMVVWVNEK 642
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       


Chain B from PDB  Type:PROTEIN  Length:637
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhh............hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh......hhhhhhh............hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.........hhhhhhh...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhh..............hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhh.............eehhhhhhhhhhh..............hhhhhhhhhhhhhhh.eee...eeee.....eeeeeee..eeeeeeeee......eeeeeeee...eeeeeeee........eeee..ee..hhh.ee..eeeeeeee...eeeeee....eeee.....hhhhh.eeeeee..eeeeeehhhhh.hhh.ee.......eeeee......eeeeeeeeeee................eeeeeeeeee.hhh.......ee..ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qjy B   6 VATNVNLKDQFWKRYIDVVRHEVIPYQWEALNDRIPDAEPSHAIENFRIAAGESDGEFYGMVFQDSDVAKWLEAVAYLLETKRDPELEKLADDVIELLGRAQQPDGYLNTYYTIKEPGKRWMNLRDNHELYCAGHLIEAAVAYFRATGKRRFLDIMCKYADYIGTVFGRGEGQIPGYDGHQEIELALLKLYEVTGNENYLKLSQYFIDQRGQQPYYFDQEKEARGETEPFWYDGGYRYHQAHIPVREQKQAVGHAVRALYMYTAMAGLAAKMGDESLKQACQTLWENVTKRQMYITGGVGSSAFGESFTFDFDLPNDTAYAETCASIALVFWTRRMLELEMDGKYADVMERALYNGTISGMDLDGKKFFYVNPLEVWPKACERHDKRHVKPVRQKWFSCACCPPNLARLIASIGHYIYLQTSDALFVHLYVGSDIQTEIDGRSVKIMQETNYPWDGTVRLTVSPESAGEFTLGLRIPGWCRGAEVTINGEKVDIVPLIKKGYAYIRRVWQQGDEVKLYFPMPVERIKAHPQVRANAGKVALQRGPIVYCLEEVDNGPNLANLFLPRDAKLEAHFEPDLLEGVVVITGIAERVDESAWNDELYRPIEPRTYKVPFRAIPYYAWCNRGEGEMVVWVNEK 642
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QJY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QJY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QJY)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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(-) Related Entries Specified in the PDB File

4qk0 STRUCTURE OF SELENOMETHIONE-LABELED ARA127N