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(-) Description

Title :  THE STRUCTURE OF MYCOBACTERIAL GLUCOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE RV2419C COMPLEXES WITH VO3
 
Authors :  W. H. Zhou, Q. Q. Zheng, D. Q. Jiang, W. Zhang, Q. Q. Zhang, J. Jin, X. Li, H. N. Shaw, Z. Rao
Date :  30 May 14  (Deposition) - 11 Jun 14  (Release) - 29 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Glycosyl-3-Phosphoglycerate, Glycolysis, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Zheng, D. Jiang, W. Zhang, Q. Zhang, Q. Zhao, J. Jin, X. Li, H. Yang, M. Bartlam, N. Shaw, W. Zhou, Z. Rao
Mechanism Of Dephosphorylation Of Glucosyl-3-Phosphoglycerate By A Histidine Phosphatase
J. Biol. Chem. V. 289 21242 2014
PubMed-ID: 24914210  |  Reference-DOI: 10.1074/JBC.M114.569913

(-) Compounds

Molecule 1 - GLUCOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE
    Chains: A, B
    EC Number: 3.1.3.-, 3.1.3.70
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GPGP, MT2492, RV2419C
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: H37RV
    Synonym: GPGP, MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE, MPGP, GLUCOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE, GPGP, MANNOSYL-3- PHOSPHOGLYCERATE PHOSPHATASE, MPGP

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1VN32Ligand/IonVANADATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:10 , HIS A:11 , ASN A:17 , GLN A:23 , ARG A:60 , GLU A:84 , HIS A:159 , GLY A:160 , HOH A:766BINDING SITE FOR RESIDUE VN3 A 601
2AC2SOFTWAREARG B:10 , HIS B:11 , ASN B:17 , GLN B:23 , ARG B:60 , GLU B:84 , HIS B:159 , GLY B:160 , HOH B:720BINDING SITE FOR RESIDUE VN3 B 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QIH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QIH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QIH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QIH)

(-) Exons   (0, 0)

(no "Exon" information available for 4QIH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhhh...........hhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhh...ee.hhhh...hhhhh..hhhhhhhhh.hhhhhhhh..........hhhhhhhhhhhhhhhhhhhh............eeeeehhhhhhhhhhhhh..hhhhhhhh.......eeeeeee......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qih A   3 ARRLVMLRHGQTDYNVGSRMQGQLDTELSELGRTQAVAAAEVLGKRQPLLIVSSDLRRAYDTAVKLGERTGLVVRVDTRLRETHLGDWQGLTHAQIDADAPGARLAWREDATWAPHGGESRVDVAARSRPLVAELVASEPEWGGADEPDRPVVLVAHGGLIAALSAALLKLPVANWPALGGMGNASWTQLSGHWDFESIRWRLDVWNAS 215
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192   ||  206         
                                                                                                                                                                                                                           196|              
                                                                                                                                                                                                                            201              


Chain B from PDB  Type:PROTEIN  Length:201
                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhhh...........hhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhh..eee.hhhh...hhhhh..hhhhhhhhh.hhhhhhhh..........hhhhhhhhhhhhhhhhhhhh........eeeeehhhhhhhhhhhhh..hhhhhhhh.......eeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qih B   3 ARRLVMLRHGQTDYNVGSRMQGQLDTELSELGRTQAVAAAEVLGKRQPLLIVSSDLRRAYDTAVKLGERTGLVVRVDTRLRETHLGDWQGLTHAQIDADAPGARLAWREDATWAPHGGESRVDVAARSRPLVAELVASEPEWEPDRPVVLVAHGGLIAALSAALLKLPVANWPALGGMGNASWTQLSGHSIRWRLDVWNAS 215
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142 ||    156       166       176       186       204       214 
                                                                                                                                                                       144|                                           195|           
                                                                                                                                                                        149                                            204
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QIH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QIH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QIH)

(-) Gene Ontology  (7, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GPGP_MYCTO | P9WIC6: 4pz9 4pza
        GPGP_MYCTU | P9WIC7: 4pz9 4pza

(-) Related Entries Specified in the PDB File

4pz9 NATIVE STRUCTURE
4pza COMPLEX WITH PO4