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(-) Description

Title :  CRYSTAL STRUCTURE OF AAA+/ SIGMA 54 ACTIVATOR DOMAIN OF THE FLAGELLAR REGULATORY PROTEIN FLRC FROM VIBRIO CHOLERAE IN ATP ANALOG BOUND STATE
 
Authors :  S. Dey, M. Biswas, U. Sen, J. Dasgupta
Date :  29 May 14  (Deposition) - 16 Jul 14  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.56
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G
Keywords :  Aaa+ Atpase Domain, Atp Hydrolysis, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Dey, M. Biswas, U. Sen, J. Dasgupta
Unique Atpase Site Architecture Triggers Cis-Mediated Synchronized Atp Binding In Heptameric Aaa+-Atpase Domain O Flagellar Regulatory Protein Flrc
J. Biol. Chem. V. 290 8734 2015
PubMed-ID: 25688103  |  Reference-DOI: 10.1074/JBC.M114.611434

(-) Compounds

Molecule 1 - FLAGELLAR REGULATORY PROTEIN C
    ChainsA, B, C, D, E, F, G
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28A+
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 132-381
    GeneFLRC
    Organism ScientificVIBRIO CHOLERAE
    Organism Taxid345073
    StrainO395

 Structural Features

(-) Chains, Units

  1234567
Asymmetric/Biological Unit ABCDEFG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 26)

Asymmetric/Biological Unit (3, 26)
No.NameCountTypeFull Name
1ANP7Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2EDO12Ligand/Ion1,2-ETHANEDIOL
3MG7Ligand/IonMAGNESIUM ION

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREMET A:131 , VAL A:132 , PRO A:160 , SER A:161 , GLY A:162 , SER A:163 , GLY A:164 , LYS A:165 , GLU A:166 , VAL A:167 , ASN A:272 , LEU A:312 , ARG A:319 , VAL A:348 , ARG A:349 , MG A:402 , HOH A:501 , HOH A:522 , HOH A:531 , HOH A:551BINDING SITE FOR RESIDUE ANP A 401
02AC2SOFTWAREASN A:187 , ASP A:230 , ANP A:401 , HOH A:531 , HOH A:547BINDING SITE FOR RESIDUE MG A 402
03AC3SOFTWAREARG A:285 , GLU A:286 , ASP A:287 , HOH A:545BINDING SITE FOR RESIDUE EDO A 403
04AC4SOFTWAREVAL A:265 , HOH A:507BINDING SITE FOR RESIDUE EDO A 404
05AC5SOFTWAREMET B:131 , VAL B:132 , SER B:161 , GLY B:162 , SER B:163 , GLY B:164 , LYS B:165 , GLU B:166 , VAL B:167 , GLU B:231 , ASN B:272 , LEU B:312 , ARG B:319 , VAL B:348 , ARG B:349 , MG B:402 , HOH B:501 , HOH B:511 , HOH B:543BINDING SITE FOR RESIDUE ANP B 401
06AC6SOFTWAREASP B:230 , GLU B:231 , ANP B:401 , HOH B:501BINDING SITE FOR RESIDUE MG B 402
07AC7SOFTWARELEU B:247 , ARG B:250 , VAL B:265BINDING SITE FOR RESIDUE EDO B 403
08AC8SOFTWAREMET C:131 , VAL C:132 , SER C:161 , GLY C:162 , SER C:163 , GLY C:164 , LYS C:165 , GLU C:166 , VAL C:167 , GLU C:231 , ASN C:272 , LEU C:312 , ARG C:319 , VAL C:348 , ARG C:349 , MG C:402 , HOH C:528 , HOH C:531 , HOH C:532 , HOH C:533 , HOH C:551BINDING SITE FOR RESIDUE ANP C 401
09AC9SOFTWAREASN C:187 , ASP C:230 , GLU C:231 , ANP C:401 , HOH C:551BINDING SITE FOR RESIDUE MG C 402
10BC1SOFTWAREARG C:285 , GLU C:286 , ASP C:287 , HOH C:535 , HOH C:569BINDING SITE FOR RESIDUE EDO C 403
11BC2SOFTWAREMET D:131 , VAL D:132 , PRO D:160 , SER D:161 , GLY D:162 , SER D:163 , GLY D:164 , LYS D:165 , GLU D:166 , VAL D:167 , ASN D:272 , LEU D:312 , HIS D:315 , ARG D:319 , VAL D:348 , ARG D:349 , MG D:402 , HOH D:533 , HOH D:538 , HOH D:548BINDING SITE FOR RESIDUE ANP D 401
12BC3SOFTWAREASP D:230 , ANP D:401 , HOH D:538BINDING SITE FOR RESIDUE MG D 402
13BC4SOFTWAREARG D:285 , GLU D:286 , ASP D:287 , HOH D:536BINDING SITE FOR RESIDUE EDO D 403
14BC5SOFTWAREASN D:154 , LEU D:247 , ARG D:250 , VAL D:265 , HOH D:504BINDING SITE FOR RESIDUE EDO D 404
15BC6SOFTWAREMET E:131 , VAL E:132 , PRO E:160 , SER E:161 , GLY E:162 , SER E:163 , GLY E:164 , LYS E:165 , GLU E:166 , VAL E:167 , ASN E:272 , LEU E:312 , HIS E:315 , ARG E:319 , VAL E:348 , ARG E:349 , MG E:402 , HOH E:510 , HOH E:535 , HOH E:564BINDING SITE FOR RESIDUE ANP E 401
16BC7SOFTWAREASN E:187 , ASP E:230 , ANP E:401 , HOH E:510BINDING SITE FOR RESIDUE MG E 402
17BC8SOFTWAREARG E:285 , GLU E:286BINDING SITE FOR RESIDUE EDO E 403
18BC9SOFTWARELEU E:247 , ARG E:250 , VAL E:265BINDING SITE FOR RESIDUE EDO E 404
19CC1SOFTWAREMET F:131 , VAL F:132 , SER F:161 , GLY F:162 , SER F:163 , GLY F:164 , LYS F:165 , GLU F:166 , VAL F:167 , ASN F:272 , LEU F:312 , ARG F:319 , VAL F:348 , ARG F:349 , MG F:402 , HOH F:501 , HOH F:522 , HOH F:525 , HOH F:530BINDING SITE FOR RESIDUE ANP F 401
20CC2SOFTWAREASP F:230 , ANP F:401 , HOH F:522 , HOH F:530BINDING SITE FOR RESIDUE MG F 402
21CC3SOFTWAREHOH E:564 , ARG F:285 , GLU F:286 , ASP F:287BINDING SITE FOR RESIDUE EDO F 403
22CC4SOFTWARELEU F:247 , ARG F:250 , VAL F:265BINDING SITE FOR RESIDUE EDO F 404
23CC5SOFTWAREHIS G:130 , MET G:131 , VAL G:132 , SER G:161 , GLY G:162 , SER G:163 , GLY G:164 , LYS G:165 , GLU G:166 , VAL G:167 , ASN G:272 , LEU G:312 , ARG G:319 , VAL G:348 , ARG G:349 , MG G:402 , HOH G:534 , HOH G:535 , HOH G:547BINDING SITE FOR RESIDUE ANP G 401
24CC6SOFTWAREASP G:230 , ANP G:401 , HOH G:534BINDING SITE FOR RESIDUE MG G 402
25CC7SOFTWAREARG G:285 , GLU G:286 , HOH G:539 , HOH G:540BINDING SITE FOR RESIDUE EDO G 403
26CC8SOFTWAREARG G:250 , VAL G:265BINDING SITE FOR RESIDUE EDO G 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QHT)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ile G:372 -Leu G:373

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QHT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QHT)

(-) Exons   (0, 0)

(no "Exon" information available for 4QHT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhh......eeeee........hhhhhhee...........eehhhhhh...eeeee.hhhhhhhhhhhhhhhhhhheee......eee...eeeee...hhhhhhhh...hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh....hhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qht A 130 HMVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQSEHILLE 375
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369      

Chain B from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhh......eeeee...hhhhhhhhhhhee...........eehhhhhh...eeeeehhhhhhhhhhhhhhhhhhhheee......eee...eeeee...hhhhhhhh...hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh....hhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qht B 130 HMVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQSEHILL 374
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369     

Chain C from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhh......eeeee...hhhhhhhhhhhee...........eehhhhhh...eeeeehhhhhhhhhhhhhhhhhhhhee........ee...eeeeee..hhhhhhhh...hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh....hhhhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qht C 130 HMVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQSEHILLEGV 377
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369        

Chain D from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhh......eeeee...hhhhhhhhhhhee...........eehhhhhh...eeeeehhhhhhhhhhhhhhhhhhhhee........ee...eeeeee..hhhhhhhh...hhhhhhhhh..eee..hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhh....hhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qht D 130 HMVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQSEHILLE 375
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369      

Chain E from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhh......eeeee...hhhhhhhhhhhee...........eehhhhhh...eeeeehhhhhhhhhhhhhhhhhhhhee........ee...eeeee...hhhhhhhh...hhhhhhhhh..eee..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh....hhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qht E 130 HMVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQSEHILLE 375
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369      

Chain F from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhh......eeeee...hhhhhhhhhhhee...........eehhhhhh...eeeeehhhhhhhhhhhhhhhhhhhhee........ee...eeeeee..hhhhhhhh...hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh....hhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qht F 130 HMVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQSEHILL 374
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369     

Chain G from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhh......eeeee...hhhhhhhhhhhee...........eehhhhhh...eeeeehhhhhhhhhhhhhhhhhhhhee........ee...eeeeee..hhhhhhhh...hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh....hhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qht G 130 HMVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQSEHILLE 375
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369      

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QHT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QHT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QHT)

(-) Gene Ontology  (0, 0)

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        A0A0H3AHP1_V | A0A0H3AHP14qhs

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