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(-) Description

Title :  HUMAN ACIREDUCTONE DIOXYGENASE WITH IRON ION AND L-METHIONINE IN ACTIVE CENTER
 
Authors :  A. M. Milaczewska, M. Chruszcz, J. J. Petkowski, E. Niedzialkowska, W. T. Borowski
Date :  23 May 14  (Deposition) - 27 May 15  (Release) - 27 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.05
Chains :  Asym./Biol. Unit :  A
Keywords :  Rmlc-Like Cupin, Oxidoreductase, Iron Binding, 1, 2-Dihydroxy-5- (Methylthio)Pent-1-En-3-One Dioxygenase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Milaczewska, M. Chruszcz, J. J. Petkowski, E. Niedzialkowska, W. Minor, T. Borowski
Human Acireductone Dioxygenase With Iron Ion And L-Methionine In Active Center
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE
    Chains: A
    EC Number: 1.13.11.54
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21 CODONPLUS DE3 RIPL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ADI1, HMFT1638, MTCBP1, NP_060739
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ACIREDUCTONE DIOXYGENASE (FE(2+)-REQUIRING), ARD, FE-ARD, MEMBRANE-TYPE 1 MATRIX METALLOPROTEINASE CYTOPLASMIC TAIL-BINDING PROTEIN 1, MTCBP-1, SUBMERGENCE-INDUCED PROTEIN-LIKE FACTOR, SIP-L

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 9)

Asymmetric/Biological Unit (5, 9)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CL2Ligand/IonCHLORIDE ION
3FE1Ligand/IonFE (III) ION
4MSE1Mod. ResidueSELENOMETHIONINE
5SO44Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:88 , HIS A:90 , GLU A:94 , HIS A:133 , MSE A:204BINDING SITE FOR RESIDUE FE A 201
2AC2SOFTWAREARG A:96 , MSE A:204BINDING SITE FOR RESIDUE CL A 202
3AC3SOFTWAREASN A:76 , TYR A:77BINDING SITE FOR RESIDUE CL A 203
4AC4SOFTWARETRP A:5 , ARG A:19 , GLY A:23 , ARG A:24 , PRO A:25BINDING SITE FOR RESIDUE SO4 A 205
5AC5SOFTWAREARG A:24 , ARG A:56 , SER A:62 , MET A:64 , HOH A:315BINDING SITE FOR RESIDUE SO4 A 206
6AC6SOFTWAREGLY A:12 , ASP A:13 , GLU A:53 , ARG A:57BINDING SITE FOR RESIDUE SO4 A 207
7AC7SOFTWAREARG A:108 , TRP A:114BINDING SITE FOR RESIDUE SO4 A 208
8AC8SOFTWAREASP A:93 , GLU A:94 , ARG A:96 , PHE A:149 , MSE A:204BINDING SITE FOR RESIDUE ACT A 209

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QGN)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp A:21 -Pro A:22
2Arg A:160 -Pro A:161

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QGN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QGN)

(-) Exons   (0, 0)

(no "Exon" information available for 4QGN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee....................hhhhhhh...eeee....hhhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhh.ee....eeeeeeee.eeeeee.....eeeeee...eeeee.....eeeee.....eeeeeee........ee.....hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qgn A   1 MVQAWYMDDAPGDPRQPHRPDPGRPVGLEQLRRLGVLYWKLDADKYENDPELEKIRRERNYSWMDIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKEDQWIRIFMEKGDMVTLPAGIYHRFTVDEKNYTKAMRLFVGEPVWTAYNRPADHFEARGQYVKFLAQT 178
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QGN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QGN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QGN)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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