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(-) Description

Title :  STRUCTURAL ANNOTATION OF PATHOGENIC BOVINE PARVOVIRUS-1
 
Authors :  S. Kailasan, S. Halder, B. L. Gurda, H. Bladek, P. R. Chipman, R. Mckenna M. Agbandje-Mckenna
Date :  09 May 14  (Deposition) - 14 Jan 15  (Release) - 18 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (60x)
Keywords :  Parvovirus, Capsid Protein, Beta Barrel, Vp2, Ssdna Virus, Jellyroll, Nucleoplasmin-Like/Vp, Viral Coat, Coat Protein, Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Kailasan, S. Halder, B. Gurda, H. Bladek, P. R. Chipman, R. Mckenna, K. Brown, M. Agbandje-Mckenna
Structure Of An Enteric Pathogen, Bovine Parvovirus.
J. Virol. V. 89 2603 2015
PubMed-ID: 25520501  |  Reference-DOI: 10.1128/JVI.03157-14

(-) Compounds

Molecule 1 - VP2
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFASTBAC-1
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Gene: BPV-1
    Organism Scientific: BOVINE PARVOVIRUS-1
    Organism Taxid: 365609
    Strain: HADEN
    Synonym: CAPSID PROTEIN VP2

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (60x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4QC8)

(-) Sites  (0, 0)

(no "Site" information available for 4QC8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QC8)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asp A:343 -Pro A:344
2Ser A:363 -Ala A:364

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QC8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QC8)

(-) Exons   (0, 0)

(no "Exon" information available for 4QC8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:498
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eeee...eeeeeeeeeeee........eeee..........eeeeeeeeee...hhhhh.hhhhhhhhhhhh.eeeeeeeeeeeeeeeeeee.........eee.....eeeee.........................ee..eeee...hhhhhh....hhhhhhhhhhh...hhhhh..eee.....eeeeee......ee.ee...hhhhh..........eeee.....eeee...............ee..............................hhhhh..................................hhhhh..........ee........ee..ee...................eee................eee......eeeee..............eeeeeeeeeeeeeeee.......................eee...eee..............ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qc8 A  39 GVGYSTGGWTGGTIFSENIVVTKNTRQFICDIKNGHLYKSEVLNTGDTAHRQYAITTPWSYFNFNQYSSHFSPNDWQHLVNDYERFRPKAMIVRVYNLQIKQIMTDGAMGTVYNNDLTAGMHIFCDGDHRYPYVQHPWDDQCMPELPNSIWELPQYAYIPAPISVVDNNTTNTVEEHLLKGVPLYMLENSDHEVLRTGESTEFTFNFGDCEWIENNITFSMPQMMYNPLVRSRRIYSYSGPNNQTSNAFQNAALRTSNWMSGPGIARGTHNATLQTQSAGALVTMVTNGADVSGVGAVRVGYSTDPIYGGQQPDSDLLRLRYSASAAEGQQNPILENAARHTFTREARTKLITGSNGADGNYKEWWMLPNQMWDSAPISRYNPIWVKVPRVNRKTLLDTQDGSIPMSHPPGTIFIKLARIPVPGNGDSFLNIYVTGQVSCEVVWEVEKRGTKNWRPEYMHSATNMSVDAYTINNAGVYAGAVQNADVMQTRFNHHKVL 536
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QC8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QC8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QC8)

(-) Gene Ontology  (2, 4)

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  Cis Peptide Bonds
    Asp A:343 - Pro A:344   [ RasMol ]  
    Ser A:363 - Ala A:364   [ RasMol ]  
 
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