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(-) Description

Title :  CRYSTAL STRUCTURE OF A FIMBRIAL PROTEIN (BVU_2522) FROM BACTEROIDES VULGATUS ATCC 8482 AT 2.55 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  06 May 14  (Deposition) - 02 Jul 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym./Biol. Unit :  A
Keywords :  Fimbrial Protein, Pf13149 Family, Duf3988, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Protein (Bvu_2522) From Bacteroides Vulgatus Atcc 8482 At 2. 55 A Resolution (Psi Community Target, Nakayama)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 22-379
    Gene: BVU_2522
    Organism Scientific: BACTEROIDES VULGATUS
    Organism Taxid: 435590
    Strain: ATCC 8482 / DSM 1447 / NCTC 11154

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 27)

Asymmetric/Biological Unit (3, 27)
No.NameCountTypeFull Name
1CL6Ligand/IonCHLORIDE ION
2MSE4Mod. Amino AcidSELENOMETHIONINE
3SO417Ligand/IonSULFATE ION

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:197 , ALA A:278 , HOH A:600 , HOH A:631BINDING SITE FOR RESIDUE SO4 A 401
02AC2SOFTWAREGLY A:264 , TYR A:265 , ASN A:266 , LYS A:267 , ASP A:312 , THR A:326 , HOH A:503BINDING SITE FOR RESIDUE SO4 A 402
03AC3SOFTWAREASN A:78 , THR A:79 , THR A:80 , ASN A:82 , LYS A:177BINDING SITE FOR RESIDUE SO4 A 403
04AC4SOFTWAREASN A:271 , HOH A:526 , HOH A:633BINDING SITE FOR RESIDUE SO4 A 404
05AC5SOFTWARELYS A:267 , SER A:268BINDING SITE FOR RESIDUE SO4 A 405
06AC6SOFTWAREGLY A:135 , GLN A:136 , ASN A:137 , ALA A:138 , HOH A:701 , HOH A:714BINDING SITE FOR RESIDUE SO4 A 407
07AC7SOFTWARESER A:69 , ALA A:70 , GLY A:71 , ASP A:94 , SER A:95 , LYS A:110 , ASP A:170BINDING SITE FOR RESIDUE SO4 A 408
08AC8SOFTWARETYR A:311 , ILE A:327 , ILE A:351 , LYS A:352 , ALA A:355 , ILE A:356BINDING SITE FOR RESIDUE SO4 A 409
09AC9SOFTWARETHR A:211 , GLY A:212 , ASN A:266 , LYS A:267 , ASN A:310 , HOH A:501 , HOH A:503BINDING SITE FOR RESIDUE SO4 A 410
10BC1SOFTWAREARG A:32 , PRO A:105 , ILE A:106 , LYS A:109BINDING SITE FOR RESIDUE SO4 A 411
11BC2SOFTWARETYR A:39 , GLN A:181 , HOH A:641BINDING SITE FOR RESIDUE SO4 A 412
12BC3SOFTWAREHIS A:165 , THR A:166BINDING SITE FOR RESIDUE SO4 A 413
13BC4SOFTWARETRP A:96 , TYR A:98 , LEU A:101 , HOH A:669BINDING SITE FOR RESIDUE SO4 A 414
14BC5SOFTWARETYR A:119 , SER A:121BINDING SITE FOR RESIDUE SO4 A 415
15BC6SOFTWARETYR A:223 , GLU A:236 , ALA A:237BINDING SITE FOR RESIDUE SO4 A 416
16BC7SOFTWARESER A:151 , ASN A:152BINDING SITE FOR RESIDUE SO4 A 417
17BC8SOFTWAREASN A:271 , ASP A:274 , THR A:279BINDING SITE FOR RESIDUE CL A 418
18BC9SOFTWARETHR A:258 , THR A:259BINDING SITE FOR RESIDUE CL A 419
19CC1SOFTWARETHR A:150BINDING SITE FOR RESIDUE CL A 420
20CC2SOFTWAREGLU A:248BINDING SITE FOR RESIDUE CL A 421
21CC3SOFTWAREALA A:302BINDING SITE FOR RESIDUE CL A 422
22CC4SOFTWARESER A:219 , THR A:220 , THR A:221BINDING SITE FOR RESIDUE CL A 423

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QB7)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ala A:117 -Pro A:118
2Ser A:239 -Pro A:240

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QB7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QB7)

(-) Exons   (0, 0)

(no "Exon" information available for 4QB7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.....hhhhhhhhh..eeeeeeee...hhhhhhhhh....eeeeeeeee..eee............eeeeeeee.............eee.........eeeee.............eee.hhhhh.........eeee..ee..eeeeeeeeee.......eeeeeeeeeee......eeeeeee....eeee.....ee....ee...................ee.......ee.......eee...hhhhh.......eeeeeeeeeeeee..eeeeeeeeeeeee.........eeeeeeeee......eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qb7 A  31 NRTIGLDVYTEVETTTSTLKANAGFGIFAYQTSSAGWNSEKGNTTPNFmYNEHATWTSDSWGYTNLRFWPIDDKKITFFAYAPYESKPEVGTDQKITLSGQNAKGAPTITFEVKTSNNWKDmIDLVTDCHTAIQDQTNESNKGTVQFKFSHVLTQIANIKVKPDVNLGTDTKIFVTGLKLDPGSTTLYNKAVYKFDNDTWEAISPDASYFSTEQDLSDFLNKTTTDQWGYNKSSINVSDDQNATALFSDTEALYFIPVNNKNGTTNAGDLKLKINYDIVTKVTDTSNLTSTITNKEVSLPKNTFKKGTKHTYVLTIKmNAIKITVEDNmEGWT 368
                                    40 ||     55        65        75        85        95       105       115       125       135       145       155 |     165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365   
                                      42|                                  84-MSE                                                                  157-MSE                                                                                                                                                                                             353-MSE    364-MSE
                                       48
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QB7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QB7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QB7)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4QB7)

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  Cis Peptide Bonds
    Ala A:117 - Pro A:118   [ RasMol ]  
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