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(-) Description

Title :  CRYSTAL STRUCTURE OF A CYSTATIN-LIKE PROTEIN (RUMGNA_02398) FROM RUMINOCOCCUS GNAVUS ATCC 29149 AT 2.10 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  05 May 14  (Deposition) - 23 Jul 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Cystatin-Like Fold, Divergent Member Of Ntf2-Like Superfamily, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Protein (Rumgna_02398) From Ruminococcus Gnavus Atcc 29149 At 2. 10 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RUMGNA_02398, ZP_02041626.1
    Organism Scientific: RUMINOCOCCUS GNAVUS
    Organism Taxid: 411470
    Strain: ATCC 29149

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 21)

Asymmetric Unit (2, 21)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2MSE20Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 10)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 10)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER B:390 , HOH B:601 , HOH B:710 , HOH B:728BINDING SITE FOR RESIDUE MG B 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QAN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QAN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QAN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QAN)

(-) Exons   (0, 0)

(no "Exon" information available for 4QAN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:385
                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh..................hhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh...hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhheeeeeee..hhhhhhhhhhhh...eeeeeeeeeee..eeeeeeeeeeee..eeeeee..............ee...............................hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhh.eeeeeeeeee.......eeeeeeeeee..eeeeeeeeeee....eeeee..hhhhh......eeehhhhhhhhhh...ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qan A   0 GKKEESEVLNVTESLQKESEITSFSEEEEAVLYmLSALKKNDLDmALRGCAIDETALQINFVKTAEELPGmQLIDLPAPTSDYSYYFPLTSAEmTKAYIEQFEELSTEIPEIETLEVLEIAEKKEKEREEQLAECLAAQEVSELEIYVKCGEQSYRLGFTAVQYEKNWKIHSLKEGLLYETDIPACVQmEEmREAKKTYVLPNQLTGANYFQAmPISEKTPQRAVEQFIYAIEKGDLTRALAFATTESSQDTSPELLKKQGEYAKELKTmLYGFLGTEDARLYGKSEEQLNKLRGKLNPEYmVYLDLIKVIPIETEENTETVKQYAGLYSYNGKNYLTGYTLCRQEDGWQIQSLSAPALSLESGEVmRLSKEESRKTSEQSVLKA 415
                            ||      40        50        60   |    70    |   80        90       100|      110       120   |   130       140       150       160       170       180       190       200       210       220 |     230       240   |   250       260       270       280       290       300       310       320       330 |     340       350       360       370       380       390      |400       410     
                            ||                              64-MSE     75-MSE                   101-MSE                124-MSE                                                                                        219-MSE                  244-MSE                                                 300-MSE                         332-MSE                                                          397-MSE              
                            0|                                                                                                                                                                                           222-MSE                                                                                                                                                                                             
                            32                                                                                                                                                                                                                                                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:372
                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh...hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhheeeeeee..hhhhhhhhhhhhh..eeeeeeeeeee..eeeeeeeeeeee..eeeeee...............eee.............................hhhhhhhhhhhhhhh.hhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhheeeeeee.........eeeeeeeeee..eeeeeeeeeee....eeeee..hhhhh......eeehhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qan B  44 SLQKESEITSFSEEEEAVLYmLSALKKNDLDmALRGCAIDETALQINFVKTAEELPGmQLIDLPAPTSDYSYYFPLTSAEmTKAYIEQFEELSTEIPEIETLEVLEIAEKKEKEREEQLAECLAAQEVSELEIYVKCGEQSYRLGFTAVQYEKNWKIHSLKEGLLYETDIPACVQmEEmREAKKTYVLPNQLTGANYFQAmPISEKTPQRAVEQFIYAIEKGDLTRALAFATTESSQDTSPELLKKQGEYAKELKTmLYGFLGTEDARLYGKSEEQLNKLRGKLNPEYmVYLDLIKVIPIETEENTETVKQYAGLYSYNGKNYLTGYTLCRQEDGWQIQSLSAPALSLESGEVmRLSKEESRKTSEQSVLKA 415
                                    53        63|       73 |      83        93       103       113       123|      133       143       153       163       173       183       193       203       213     | 223       233       243|      253       263       273       283       293      |303       313       323       333       343       353       363       373       383       393   |   403       413  
                                               64-MSE     75-MSE                   101-MSE                124-MSE                                                                                        219-MSE                  244-MSE                                                 300-MSE                         332-MSE                                                          397-MSE              
                                                                                                                                                                                                            222-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QAN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QAN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QAN)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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