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(-) Description

Title :  STRUCTURE OF THE RESUSCITATION PROMOTING FACTOR INTERACTING PROTEIN RIPA MUTATED AT E444
 
Authors :  F. Squeglia, A. Ruggiero, M. Romano, L. Vitagliano, R. Berisio
Date :  15 Apr 14  (Deposition) - 10 Sep 14  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.63
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha Beta, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Squeglia, A. Ruggiero, M. Romano, L. Vitagliano, R. Berisio
Mutational And Structural Study Of Ripa, A Key Enzyme In Mycobacterium Tuberculosis Cell Division: Evidence For The L-To-D Inversion Of Configuration Of The Catalytic Cysteine
Acta Crystallogr. , Sect. D V. 70 2295 2014
PubMed-ID: 25195744  |  Reference-DOI: 10.1107/S1399004714013674

(-) Compounds

Molecule 1 - PEPTIDOGLYCAN ENDOPEPTIDASE RIPA
    Chains: A
    EC Number: 3.4.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RIPA
    Gene: RIPA, RV1477
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: ATCC 25618 / H37RV
    Synonym: MACROPHAGE INVASION AND INTRACELLULAR PERSISTENCE PROTEIN A, RESUSCITATION-PROMOTING FACTOR INTERACTION PARTNER A, RPF-INTERACTING PROTEIN A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1FMT2Ligand/IonFORMIC ACID
2GOL2Ligand/IonGLYCEROL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:432 , ALA A:444 , ARG A:453 , ALA A:455 , ARG A:458BINDING SITE FOR RESIDUE FMT A 501
2AC2SOFTWARESER A:276 , CYS A:383 , SER A:384 , HIS A:432 , VAL A:433 , GOL A:503 , HOH A:661BINDING SITE FOR RESIDUE FMT A 502
3AC3SOFTWAREPRO A:272 , TYR A:358 , HIS A:432 , PRO A:446 , FMT A:502 , HOH A:650 , HOH A:661 , HOH A:666BINDING SITE FOR RESIDUE GOL A 503
4AC4SOFTWARETHR A:323 , ALA A:325 , GLN A:331 , GLY A:332 , ARG A:333 , ILE A:334 , TYR A:469 , ILE A:470 , GLU A:471 , HOH A:659 , HOH A:674 , HOH A:724BINDING SITE FOR RESIDUE GOL A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Q4T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Q4T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Q4T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Q4T)

(-) Exons   (0, 0)

(no "Exon" information available for 4Q4T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eeeee....eeeehhhhhhhhhhhhhhhh......................hhhhhhhhhhhhhhhhhh................ee.hhhhh..ee.hhhhhhhhhhhh.......hhhhhh...eeee.hhh....eeeehhhhh.eeeeeee..eeee........eeee........eeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q4t A 265 GLWDPTLPMIPSANIPGDPIAVVNQVLGISATSAQVTANMGRKFLEQLGILQPTDTGITNAPAGSAQGRIPRVYGRQASEYVIRRGMSQIGVPYSWGGGNAAGPSKGIDSGAGTVGFDCSGLVLYSFAGVGIKLPHYSGSQYNLGRKIPSSQMRRGDVIFYGPNGSQHVTIYLGNGQMLAAPDVGLKVRVAPVRTAGMTPYVVRYIEY 472
                                   274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Q4T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Q4T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Q4T)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  4q4t
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  RIPA_MYCTU | O53168
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  3.4.-.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RIPA_MYCTU | O53168: 2xiv 3ne0 3pbc 3s0q 4q4g 4q4n

(-) Related Entries Specified in the PDB File

4q4g 4q4n