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(-) Description

Title :  HUMAN D-DT COMPLEXED WITH TARTRATE
 
Authors :  D. Rajasekaran, E. Lolis
Date :  11 Apr 14  (Deposition) - 04 Jun 14  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (3x)
Biol. Unit 2:  B  (3x)
Biol. Unit 3:  C  (3x)
Keywords :  Tautomerase, Cd74, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Rajasekaran, S. Zierow, M. Syed, R. Bucala, V. Bhandari, E. J. Lolis
Targeting Distinct Tautomerase Sites Of D-Dt And Mif With A Single Molecule For Inhibition Of Neutrophil Lung Recruitment.
Faseb J. V. 28 4961 2014
PubMed-ID: 25016026  |  Reference-DOI: 10.1096/FJ.14-256636

(-) Compounds

Molecule 1 - D-DOPACHROME DECARBOXYLASE
    Chains: A, B, C
    EC Number: 4.1.1.84
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: DDT
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: D-DOPACHROME TAUTOMERASE, PHENYLPYRUVATE TAUTOMERASE II

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (3x): A  
Biological Unit 2 (3x):  B 
Biological Unit 3 (3x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1TLA3Ligand/IonL(+)-TARTARIC ACID
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1TLA3Ligand/IonL(+)-TARTARIC ACID
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1TLA3Ligand/IonL(+)-TARTARIC ACID
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1TLA3Ligand/IonL(+)-TARTARIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:1 , PHE A:2 , LYS A:32 , ARG A:36 , SER A:63 , ILE A:64 , LYS A:109 , MET A:114 , HOH A:401 , HOH A:474 , HOH A:484BINDING SITE FOR RESIDUE TLA A 201
2AC2SOFTWAREPRO B:1 , PHE B:2 , LYS B:32 , ARG B:36 , SER B:63 , ILE B:64 , HOH B:357 , HOH B:387 , HOH B:404 , HOH B:443 , HOH B:489BINDING SITE FOR RESIDUE TLA B 201
3AC3SOFTWAREPRO C:1 , PHE C:2 , LYS C:32 , ARG C:36 , SER C:63 , ILE C:64 , HOH C:406 , HOH C:436BINDING SITE FOR RESIDUE TLA C 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Q3F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Q3F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Q3F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Q3F)

(-) Exons   (0, 0)

(no "Exon" information available for 4Q3F)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:117
                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhhh.hhhhheeeee..............eeeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeeehhhh.ee..ee.hhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 4q3f A   1 PFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain B from PDB  Type:PROTEIN  Length:117
                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhhh.hhhhheeeee..............eeeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeeehhhh.ee..ee.hhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 4q3f B   1 PFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain C from PDB  Type:PROTEIN  Length:117
                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhhh.hhhhheeeee..............eeeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeeehhhh.ee..ee.hhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 4q3f C   1 PFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL 117
                                    10        20        30        40        50        60        70        80        90       100       110
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Q3F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Q3F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Q3F)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        DOPD_HUMAN | P30046: 1dpt 3kan

(-) Related Entries Specified in the PDB File

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