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(-) Description

Title :  PCE1 GUANYLYLTRANSFERASE BOUND TO SPT5 CTD
 
Authors :  S. K. Doamekpor, C. D. Lima
Date :  28 Mar 14  (Deposition) - 25 Jun 14  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Nucleotidyl Transferase, Rna Capping Enzyme, Rna Polymerase Ii, Spt5, Guanylation, Nuclear, Transferase-Transcription Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. K. Doamekpor, A. M. Sanchez, B. Schwer, S. Shuman, C. D. Lima
How An Mrna Capping Enzyme Reads Distinct Rna Polymerase Ii And Spt5 Ctd Phosphorylation Codes.
Genes Dev. V. 28 1323 2014
PubMed-ID: 24939935  |  Reference-DOI: 10.1101/GAD.242768.114

(-) Compounds

Molecule 1 - MRNA-CAPPING ENZYME SUBUNIT ALPHA
    Chains: A
    EC Number: 2.7.7.50
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSMT3 (SUMO)
    Expression System Strain: BL21(DE3) CP-RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CEG1, CEG1/PCE1, PCE1, SPBC2F12.08C
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 284812
    Strain: 972 / ATCC 24843
    Synonym: GTP--RNA GUANYLYLTRANSFERASE, GTASE, MRNA GUANYLYLTRANSFERASE
 
Molecule 2 - TRANSCRIPTION ELONGATION FACTOR SPT5
    Chains: B
    Engineered: YES
    Fragment: SPT5 C-TERMINAL DOMAIN PEPTIDE
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 284812
    Synonym: CHROMATIN ELONGATION FACTOR SPT5
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric/Biological Unit (2, 12)
No.NameCountTypeFull Name
1GPL1Mod. Amino AcidLYSINE GUANOSINE-5'-MONOPHOSPHATE
2SO411Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:331 , ALA A:334 , ASN A:335 , HIS A:336 , THR A:339BINDING SITE FOR RESIDUE SO4 A 501
02AC2SOFTWAREARG A:82 , LYS A:331 , ARG A:332 , ASP A:333BINDING SITE FOR RESIDUE SO4 A 502
03AC3SOFTWAREARG A:29 , ARG A:281BINDING SITE FOR RESIDUE SO4 A 503
04AC4SOFTWAREPRO A:243 , LYS A:244 , SER A:352 , LYS A:353BINDING SITE FOR RESIDUE SO4 A 504
05AC5SOFTWAREASP A:250 , ARG A:328 , LYS A:331BINDING SITE FOR RESIDUE SO4 A 505
06AC6SOFTWAREARG A:157 , LYS A:161BINDING SITE FOR RESIDUE SO4 A 506
07AC7SOFTWAREHIS A:80 , TYR A:83 , HIS A:100 , ARG A:332BINDING SITE FOR RESIDUE SO4 A 507
08AC8SOFTWAREARG A:157 , LEU A:158 , LYS A:161BINDING SITE FOR RESIDUE SO4 A 508
09AC9SOFTWARETYR A:291 , LYS A:295 , ARG A:321 , PRO A:373BINDING SITE FOR RESIDUE SO4 A 509
10BC1SOFTWAREHIS A:201 , TYR A:368BINDING SITE FOR RESIDUE SO4 A 510
11BC2SOFTWARESER A:37 , THR A:40BINDING SITE FOR RESIDUE SO4 A 511

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PZ8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PZ8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PZ8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PZ8)

(-) Exons   (0, 0)

(no "Exon" information available for 4PZ8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:368
                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........ee.hhhhhhhhhhhhhhhhh........eeeee..hhhhhhhhhh.eeeeeee..eeeeeeeee.......eeeeee.....eeee...................eeeeeeeeeee.....eeeeeeeeeeeee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee...ee..hhhhhhhhhhhhh...eeeeeeee.......eeeeeeeee.hhhh.eeeeeeeee...............eeeeeee.....eeeeee...hhhhhhhhh........eeeeeee.....eeeeee........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pz8 A   2 APSEEVSVPGVLAPRDDVRVLKTRIAKLLGTSPDTFPGSQPVSFSKKHLQALKEKNYFVCEkSDGIRCLLYMTEHPRYENRPSVYLFDRKMNFYHVEKIFYPVENDKSGKKYHVDTLLDGELVLDIYPGGKKQLRYLVFDCLACDGIVYMSRLLDKRLGIFAKSIQKPLDEYTKTHMRETAIFPFLTSLKKMELGHGILKLFNEVIPRLRHGNDGLIFTCTETPYVSGTDQSLLKWKPKEMNTIDFMLKLEFAQPEEGDIDYSAMPEFQLGVWEGRNMYSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFRDDKRDANHISTVKSVLQSIEDGVSKEDLLKEMPIIREAYYNRKKP 373
                               ||   15        25        35        45        55        65 |      75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365        
                               5|                                                       67-GPL                                                                                                                                                                                                                                                                                                              
                               10                                                                                                                                                                                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 4pz8 B   3 AWNS   6
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PZ8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PZ8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PZ8)

(-) Gene Ontology  (19, 22)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MCE1_SCHPO | P40997: 4pz6 4pz7

(-) Related Entries Specified in the PDB File

4pz6 4pz7