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(-) Description

Title :  CRYSTAL STRUCTURE OF AN EXOPOLYPHOSPHATASE-RELATED PROTEIN FROM BACTEROIDES FRAGILIS. NORTHEAST STRUCTURAL GENOMICS TARGET BFR192
 
Authors :  J. Seetharaman, M. Abashidze, H. Wang, H. Janjua, E. L. Foote, R. Xiao, R J. K. Everett, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt Northeast Structural Genomics Consortium (Nesg)
Date :  26 Mar 14  (Deposition) - 25 Jun 14  (Release) - 25 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Exopolyphosphatase-Related Protein, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Seetharaman, M. Abashidze, H. Wang, H. Janjua, E. L. Foote, R. Xiao, R. Nair, J. K. Everett, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Crystal Structure Of An Exopolyphosphatase-Related Protein From Bacteroides Fragilis. Northeast Structural Genomics Target Bfr192
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE EXOPOLYPHOSPHATASE-RELATED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BF3900
    Organism Scientific: BACTEROIDES FRAGILIS
    Organism Taxid: 817

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 19)

Asymmetric Unit (3, 19)
No.NameCountTypeFull Name
1MSE11Mod. Amino AcidSELENOMETHIONINE
2NA4Ligand/IonSODIUM ION
3PO44Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 15)
No.NameCountTypeFull Name
1MSE11Mod. Amino AcidSELENOMETHIONINE
2NA-1Ligand/IonSODIUM ION
3PO44Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 30)
No.NameCountTypeFull Name
1MSE22Mod. Amino AcidSELENOMETHIONINE
2NA-1Ligand/IonSODIUM ION
3PO48Ligand/IonPHOSPHATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:29 , ARG A:105 , HIS A:126 , HIS A:311 , PO4 A:402 , HOH A:558 , HOH A:559 , HOH A:564BINDING SITE FOR RESIDUE PO4 A 401
2AC2SOFTWAREHIS A:125 , HIS A:126 , ASP A:177 , HIS A:311 , PO4 A:401 , HOH A:504 , HOH A:538 , HOH A:564 , HOH A:606BINDING SITE FOR RESIDUE PO4 A 402
3AC3SOFTWARELYS A:87 , GLU A:91 , LEU A:127 , GLY A:310 , HIS A:311 , LEU A:312 , HOH A:506 , HOH A:538BINDING SITE FOR RESIDUE PO4 A 403
4AC4SOFTWAREGLU A:83 , TYR A:183 , ASN A:184 , ASN A:186 , ASP A:205 , ARG A:209BINDING SITE FOR RESIDUE PO4 A 404
5AC5SOFTWAREASN A:184BINDING SITE FOR RESIDUE NA A 405
6AC6SOFTWAREASP A:33 , ASP A:35 , THR A:176 , ASP A:177BINDING SITE FOR RESIDUE NA A 406
7AC7SOFTWAREVAL A:5 , ILE A:6 , ARG A:151 , ARG A:155BINDING SITE FOR RESIDUE NA A 407
8AC8SOFTWAREASN A:101 , ASP A:124 , HIS A:126 , SER A:138BINDING SITE FOR RESIDUE NA A 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PY9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PY9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PY9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PY9)

(-) Exons   (0, 0)

(no "Exon" information available for 4PY9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:340
                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh.eeeee.....hhhhhhhhhhhhhhhhhh..eeeeee....hhhhh...hhhhhee...hhhhhhhhhhhh.eeeee...hhhhhh.hhhhhhhh..eeeeee..........eeee.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh...hhhhhhhhhhh..hhhhhhhhhhhhhh.eeehhh.eeeeeehhhhhhhh........hhhhhhhhh....eeeeeee....eeeeeee....hhhhhhhhhh..ee...eeeeee..hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4py9 A   2 LTKVIAQAHIDHFTKWFERADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNAFPDFLKWmPGSKDILLYDRYQEFADKLImEADVICCLDFNALKRIDEmSDIVAASPGRKImIDHHLYPEDFCRITISHPEISSTSELVFRLICRmGYFSDISKEGAECIYTGmmTDTGGFTYNSNNREIYFIISELLSKGIDKDDIYRKVYNTYSESRLRLmGYVLSNmKVYKDYNSALISLTKEEQGKFDYIKGDSEGFVNIPLSIKNVCFSCFLREDTEmIKISLRSVGKFPCNRLAAEFFNGGGHLNASGGEFYGTmEEAVKVFEQALEKYKPLLKE 343
                                    11        21        31        41        51        61       |71        81        91       101       111       121|      131       141       151    |  161       171  ||   181       191       201       211       221 |     231       241       251       261       271       281||     293       303       313       323       333       343
                                                                                              69-MSE               90-MSE            109-MSE      122-MSE                           156-MSE           174-MSE                                          223-MSE  |                                                 282|                                   323-MSE                
                                                                                                                                                                                                       175-MSE                                                230-MSE                                              285-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PY9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PY9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PY9)

(-) Gene Ontology  (1, 1)

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        Q64PD9_BACFR | Q64PD9: 3w5w

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