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(-) Description

Title :  MICOBACTERIAL ADENOSINE KINASE IN COMPLEX WITH INHIBITOR
 
Authors :  I. Pichova, M. Hocek, J. Dostal, P. Rezacova
Date :  18 Mar 14  (Deposition) - 26 Nov 14  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Adenosine Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Snasel, P. Naus, J. Dostal, A. Hnizda, J. Fanfrlik, J. Brynda, A. Bourderioux, M. Dusek, H. Dvorakova, J. Stolarikova, H. Zabranska R. Pohl, P. Konecny, P. Dzubak, I. Votruba, M. Hajduch, P. Rezacova, V. Veverka, M. Hocek, I. Pichova
Structural Basis For Inhibition Of Mycobacterial And Human Adenosine Kinase By 7-Substituted 7-(Het)Aryl-7-Deazaadenin Ribonucleosides
J. Med. Chem. V. 57 8268 2014
PubMed-ID: 25259627  |  Reference-DOI: 10.1021/JM500497V

(-) Compounds

Molecule 1 - ADENOSINE KINASE
    Chains: A
    EC Number: 2.7.1.20
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ADOK
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Synonym: AK

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1HO41Ligand/Ion5-ETHYNYL-7-(BETA-D-RIBOFURANOSYL)-7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1HO42Ligand/Ion5-ETHYNYL-7-(BETA-D-RIBOFURANOSYL)-7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:8 , ALA A:10 , ASP A:12 , GLY A:47 , GLY A:48 , VAL A:49 , ASN A:52 , PHE A:102 , PHE A:116 , ALA A:146 , GLN A:172 , THR A:253 , ASP A:257 , HOH A:501BINDING SITE FOR RESIDUE HO4 A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PVV)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asp A:109 -Met A:110

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PVV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PVV)

(-) Exons   (0, 0)

(no "Exon" information available for 4PVV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:321
                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eeeeeee....hhhhhh..............eeeeeeehhhhhhhhhhhhh...eeee.ee...hhhhhhhhhhh.eehhhhee.....eeeeeeee.....eeeeeeee.hhhhhh..hhhhhhhhh...eeee...hhhhhhhhhhhhhhh...eee...hhhhhhhhhhhhh......eeeeehhhhhhhhhhhh.hhhhhhhhh..eeee....eee.........eee........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pvv A   1 MTIAVTGSIATDHLMRFPGRFSEQLLPEHLHKVSLSFLVDDLVMHRGGVAGNMAFAIGVLGGEVALVGAAGADFADYRDWLKARGVNCDHVLISETAHTARFTCTTDVDMAQLASFYPGAMSEARNIKLADVVSAIGKPELVIIGANDPEAMFLHTEECRKLGLAFAADPSQQLARLSGEEIRRLVNGAAYLFTNDYEWDLLLSKTGWSEADVMAQIDLRVTTLGPKGVDLVEPDGTTIHVGVVPETDPTGVGDAFRAGFLTGRSAGLGLERSAQLGSLVAVLVLESTGTQEWQWDYEAAASRLAGAYGEHAAAEIVAVLA 324
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240      |253       263       273       283       293       303       313       323 
                                                                                                                                                                                                                                                                                247|                                                                         
                                                                                                                                                                                                                                                                                 251
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PVV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PVV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PVV)

(-) Gene Ontology  (14, 23)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ADOK_MYCTO | P9WID4: 2pkf 2pkk 2pkm 2pkn 4o1g
        ADOK_MYCTU | P9WID5: 2pkf 2pkk 2pkm 2pkn 4o1g

(-) Related Entries Specified in the PDB File

4o1l