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(-) Description

Title :  PHL P 4 N158H VARIANT, A GLUCOSE DEHYDROGENASE
 
Authors :  D. Zafred, A. Teufelberger, W. Keller, P. Macheroux
Date :  17 Mar 14  (Deposition) - 02 Apr 14  (Release) - 02 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Flavoprotein, Bi-Covalent Flavinylation, Oxidoreductase, Allergen, Glucose Dehydrogenase, Low Oxygen Reactivity, Grass Pollen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Zafred, B. Steiner, A. R. Teufelberger, A. Hromic, P. A. Karplus, C. J. Schofield, S. Wallner, P. Macheroux
Rationally Engineered Flavin-Dependent Oxidase Reveals Steric Control Of Dioxygen Reduction.
Febs J. V. 282 3060 2015
PubMed-ID: 25619330  |  Reference-DOI: 10.1111/FEBS.13212

(-) Compounds

Molecule 1 - POLLEN ALLERGEN PHL P 4.0202
    Chains: A
    Engineered: YES
    Expression System: KOMAGATAELLA PASTORIS
    Expression System Common: PICHIA PASTORIS
    Expression System Taxid: 4922
    Fragment: PHL P 4.0202
    Gene: PHLP4
    Mutation: YES
    Organism Common: TIMOTHY
    Organism Scientific: PHLEUM PRATENSE
    Organism Taxid: 15957

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2MLI2Ligand/IonMALONATE ION
3NA2Ligand/IonSODIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:81 , ARG A:82 , SER A:83 , GLY A:84 , GLY A:85 , HIS A:86 , ASP A:87 , TYR A:88 , SER A:92 , LEU A:106 , SER A:125 , GLY A:148 , VAL A:149 , CYS A:150 , ILE A:153 , GLY A:154 , GLY A:157 , HIS A:158 , GLY A:163 , PHE A:164 , GLY A:209 , GLU A:210 , GLY A:213 , VAL A:215 , TYR A:436 , ASN A:438 , ARG A:440 , ASN A:489 , HOH A:701 , HOH A:706 , HOH A:710 , HOH A:1232BINDING SITE FOR RESIDUE FAD A 601
2AC2SOFTWAREGLU A:89 , GLU A:338 , HOH A:716 , HOH A:729 , HOH A:749 , HOH A:820BINDING SITE FOR RESIDUE NA A 602
3AC3SOFTWARELYS A:430 , LYS A:468 , HOH A:777 , HOH A:1002 , HOH A:1086 , HOH A:1298 , HOH A:1299BINDING SITE FOR RESIDUE NA A 603
4AC4SOFTWAREPRO A:382 , LYS A:392 , TYR A:456 , HOH A:724 , HOH A:796 , HOH A:1015 , HOH A:1021 , HOH A:1099BINDING SITE FOR RESIDUE MLI A 604
5AC5SOFTWARELEU A:12 , VAL A:16 , PRO A:21 , HOH A:1297BINDING SITE FOR RESIDUE MLI A 605

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:14 -A:71
2A:281 -A:302

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asn A:431 -Pro A:432

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PVH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PVH)

(-) Exons   (0, 0)

(no "Exon" information available for 4PVH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:490
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.eee....hhhhhhhh...hhhhh........eee...hhhhhhhhhhhhhhh..eeeee..................eeeee......eeee....eeeee...hhhhhhhhhhhhh..ee.........hhhhhhhh.....hhhhhhhhhh.eeeeeee.....eehhhhhhhhhhhhhh........eeeeeeee.ee....eeeeeeeee...hhhhhhhhhhhhhhhh...eeeeeee...eeeeeeee..hhhhhhhhhhhhhhhhh.hhhhheeehhhhhhhhhhhh...hhhhhhh........eeeeeeeee....hhhhhhhhhhh........eeeeee.hhhhhhh..............eeeeeeeee.....hhhhhhhhhhhhhhhhhhh............hhhhh...ee..eehhhhhhhhhhhhhh.hhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pvh A   9 EDFLGCLVKEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHTVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGHFAGGGFGMLLRKYGIAAENVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINKWQVVAPQLPADLMIRIIAQGPKATFEAMYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDYFRNEQSIPPLIK 498
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PVH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PVH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PVH)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B2ZWE9_PHLPR | B2ZWE9: 4pve 4pvj 4pvk 4pwb 4pwc

(-) Related Entries Specified in the PDB File

4pve WILD-TYPE PHL P 4.0202, A GLUCOSE DEHYDROGENASE
4pvj PHL P 4 I153V VARIANT, A GLUCOSE OXIDASE
4pvk PHL P 4 I153V N158H VARIANT, A GLUCOSE OXIDASE
4pwb PHL P 4 I153V VARIANT, A GLUCOSE OXIDASE, PRESSURIZED WITH XENON
4pwc PHL P 4 I153V N158H VARIANT, A GLUCOSE OXIDASE, 3.5 M NABR SOAK
4pzf BERBERINE BRIDGE ENZYME G164A VARIANT, A RETICULINE DEHYDROGENASE