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(-) Description

Title :  CRYSTAL STRUCTURE OF A SUSD HOMOLOG (BACUNI_02643) FROM BACTEROIDES UNIFORMIS ATCC 8492 AT 2.00 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  12 Mar 14  (Deposition) - 04 Jun 14  (Release) - 04 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Susd-Like Family, Pf12741, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Susd Homolog (Bacuni_02643) From Bacteroides Uniformis Atcc 8492 At 2. 00 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUSD HOMOLOG
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BACUNI_02643
    Organism Scientific: BACTEROIDES UNIFORMIS
    Organism Taxid: 411479
    Strain: ATCC 8492

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 28)

Asymmetric/Biological Unit (3, 28)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2MSE18Mod. Amino AcidSELENOMETHIONINE
3ZN6Ligand/IonZINC ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:175 , GLU A:486 , HOH A:723 , HOH A:739 , HOH A:1010 , HOH A:1011BINDING SITE FOR RESIDUE ZN A 601
02AC2SOFTWAREASP A:377 , ACT A:604 , ACT A:605 , ASP B:257BINDING SITE FOR RESIDUE ZN A 602
03AC3SOFTWAREASP A:257 , ACT A:606 , ASP B:377 , ACT B:604BINDING SITE FOR RESIDUE ZN A 603
04AC4SOFTWAREASP A:377 , GLU A:380 , ZN A:602 , ACT A:605 , THR B:254 , ALA B:256 , ASP B:257BINDING SITE FOR RESIDUE ACT A 604
05AC5SOFTWARETHR A:374 , ASP A:377 , ZN A:602 , ACT A:604 , LYS B:213 , LYS B:216 , ASP B:257BINDING SITE FOR RESIDUE ACT A 605
06AC6SOFTWAREGLN A:212 , LYS A:213 , LYS A:216 , ASP A:257 , ZN A:603 , THR B:374 , ASP B:377 , ACT B:604BINDING SITE FOR RESIDUE ACT A 606
07AC7SOFTWAREASP B:108 , HOH B:746 , HOH B:821 , HOH B:1068 , HOH B:1070BINDING SITE FOR RESIDUE ZN B 601
08AC8SOFTWAREGLU A:253 , HOH A:714 , GLU B:253 , HOH B:1067BINDING SITE FOR RESIDUE ZN B 602
09AC9SOFTWAREASP B:43 , HOH B:1080 , HOH B:1081 , HOH B:1082 , HOH B:1083BINDING SITE FOR RESIDUE ZN B 603
10BC1SOFTWARETHR A:254 , ASP A:257 , ZN A:603 , ACT A:606 , ASP B:377 , GLU B:380BINDING SITE FOR RESIDUE ACT B 604

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PUC)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Trp A:451 -Pro A:452
2Tyr A:466 -Pro A:467
3Trp B:451 -Pro B:452
4Tyr B:466 -Pro B:467

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PUC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PUC)

(-) Exons   (0, 0)

(no "Exon" information available for 4PUC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:488
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.....hhhhhhhhhh.hhhhhh..eee..............hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhhhh.....hhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh......hhhhheee.......hhhhhhhhhhhhhhh..eeehhhhhhhhhhh...hhhhhee.................hhhhh.hhhhh.ee.......eeeehhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh...hhhhhhh.................................hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.............................hhhhhhhhhhhhhhhhhhh..........hhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4puc A  42 DDYALGSAmSNLASTVISSDVNTAQFTDCLLGGPLGGYFADSNAGWSNTISNFNATNDWTRVFLISDRIISTLYGNLSTVKQVSENTNNPVPYAIAQIIKVAAmSRVTDAYGPIPYSKIGQDGKITIPYDTQEEVYNAFFKELDESIEVLTENRNAALVASADFVYSGNVQKWVKFANSLKLRLAIRIANVSPAKAKEmAESAVNHELGLIETNADNATWKYFGTISNPLFVAVRYNEEASGGDTHPAADIICYmNGYNDNRRASYFEESKWPGETYVGLRRGINLSKmKEYFINYSRVKISSSDPVLWmNAAEVAFLRAEATAIYGFNmKGTAADFYEQGVRLSFEQWGATGVDSYLADESSVPALYKDPAGLNTYEKNLSAITVKWNEGASKEEKQERIITQKWIANWPLGNEAWADYRRTGYPKLLPATSEGNLSGGIVDSEKGARRmPYPSEEYTSNTENVQEAVNSYLGGPDNmATDVWWARK 529
                                    51        61        71        81        91       101       111       121       131       141   |   151       161       171       181       191       201       211       221       231       241       251       261       271       281       291    |  301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491|      501       511       521        
                                   50-MSE                                                                                        145-MSE                                                                                        240-MSE                                                 296-MSE                           330-MSE              351-MSE             371-MSE                                                                                                                  492-MSE                     520-MSE     


Chain B from PDB  Type:PROTEIN  Length:492
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.....hhhhhhhhhh.hhhhhh..eee..............hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhhhh.....hhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh......hhhhheee.......hhhhhhhhhhhhhhh..eeehhhhhhhhhhh...hhhhhee.................hhhhh.hhhhh.ee.......eeeehhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh...hhhhhhh.................................hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.............................hhhhhhhhhhhhhhhhhhh..........hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4puc B  38 DLTPDDYALGSAmSNLASTVISSDVNTAQFTDCLLGGPLGGYFADSNAGWSNTISNFNATNDWTRVFLISDRIISTLYGNLSTVKQVSENTNNPVPYAIAQIIKVAAmSRVTDAYGPIPYSKIGQDGKITIPYDTQEEVYNAFFKELDESIEVLTENRNAALVASADFVYSGNVQKWVKFANSLKLRLAIRIANVSPAKAKEmAESAVNHELGLIETNADNATWKYFGTISNPLFVAVRYNEEASGGDTHPAADIICYmNGYNDNRRASYFEESKWPGETYVGLRRGINLSKmKEYFINYSRVKISSSDPVLWmNAAEVAFLRAEATAIYGFNmKGTAADFYEQGVRLSFEQWGATGVDSYLADESSVPALYKDPAGLNTYEKNLSAITVKWNEGASKEEKQERIITQKWIANWPLGNEAWADYRRTGYPKLLPATSEGNLSGGIVDSEKGARRmPYPSEEYTSNTENVQEAVNSYLGGPDNmATDVWWARK 529
                                    47  |     57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237  |    247       257       267       277       287       297       307       317       327  |    337       347   |   357       367   |   377       387       397       407       417       427       437       447       457       467       477       487    |  497       507       517  |    527  
                                       50-MSE                                                                                        145-MSE                                                                                        240-MSE                                                 296-MSE                           330-MSE              351-MSE             371-MSE                                                                                                                  492-MSE                     520-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PUC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PUC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PUC)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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