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(-) Description

Title :  CRYSTAL STRUCTURE OF LOCUSTA MIGRATORIA ODORANT BINDING PROTEINS LMIGOBP1
 
Authors :  J. Zheng, J. Li, Z. Chen
Date :  10 Mar 14  (Deposition) - 31 Dec 14  (Release) - 21 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Obp, Odorant Perception, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zheng, J. Li, L. Han, Y. Wang, W. Wu, X. Qi, Y. Tao, L. Zhang, Z. Zhang, Z. Chen
Crystal Structure Of The Locusta Migratoria Odorant Binding Protein.
Biochem. Biophys. Res. Commun. V. 456 737 2015
PubMed-ID: 25522876  |  Reference-DOI: 10.1016/J.BBRC.2014.12.048

(-) Compounds

Molecule 1 - ODORANT-BINDING PROTEIN 1D
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-22B
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: LMIGOBP1
    Organism Common: MIGRATORY LOCUST
    Organism Scientific: LOCUSTA MIGRATORIA
    Organism Taxid: 7004

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1PG04Ligand/Ion2-(2-METHOXYETHOXY)ETHANOL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1PG02Ligand/Ion2-(2-METHOXYETHOXY)ETHANOL
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1PG02Ligand/Ion2-(2-METHOXYETHOXY)ETHANOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR B:110 , PG0 B:202BINDING SITE FOR RESIDUE PG0 B 201
2AC2SOFTWARELEU B:33 , PG0 B:201BINDING SITE FOR RESIDUE PG0 B 202

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:22 -A:53
2A:49 -A:100
3A:91 -A:109
4B:22 -B:53
5B:49 -B:100
6B:91 -B:109

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PT1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PT1)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4PT1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pt1 A   3 VNMKLTGRIMDAAKEVDHTCRSSTGVPRDMLHRYAEGQTVDDDDFKCYLKCIMVEFNSLSDDGVFVLEEELENVPPEIKEEGHRVVHSCKHINHDEACETAYQIHQCYKQSDPELYSLVVRAFDATIGD 131
                                    12        22        32        42        52        62        72        82        92       102       112       122         


Chain B from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pt1 B   4 NMKLTGRIMDAAKEVDHTCRSSTGVPRDMLHRYAEGQTVDDDDFKCYLKCIMVEFNSLSDDGVFVLEEELENVPPEIKEEGHRVVHSCKHINHDEACETAYQIHQCYKQSDPELYSLVVRAFDATIGD 131
                                    13        23        33        43        53        63        73        83        93       103       113       123
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PT1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PT1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PT1)

(-) Gene Ontology  (1, 1)

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