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(-) Description

Title :  A DE NOVO DESIGNED PENTAMERIC COILED COIL CC-PENT_VARIANT
 
Authors :  C. W. Wood, A. J. Burton, A. R. Thomson, R. L. Brady, D. N. Woolfson
Date :  23 May 14  (Deposition) - 22 Oct 14  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  De Novo Protein, Artificially Designed - Often Synthetic, Alpha- Helical Barrel, Coiled Coil, Protein Design (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. R. Thomson, C. W. Wood, A. J. Burton, G. J. Bartlett, R. B. Sessions, R. L. Brady, D. N. Woolfson
Computational Design Of Water-Soluble Alpha-Helical Barrels
Science V. 346 485 2014
PubMed-ID: 25342807  |  Reference-DOI: 10.1126/SCIENCE.1257452

(-) Compounds

Molecule 1 - CC-PENT_VARIANT
    Chains: A, B, C, D, E
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: THE MOLECULE WAS SYNTHESISED USING SOLID PHASE PEPTIDE SYNTHESIS.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1ACE3Mod. Amino AcidACETYL GROUP

(-) Sites  (0, 0)

(no "Site" information available for 4PND)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PND)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PND)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PND)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PND)

(-) Exons   (0, 0)

(no "Exon" information available for 4PND)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:31
                                                              
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                  4pnd A  0 xGNILQKIENILKKIENILWKIENILQKIEG 30
                            |        9        19        29 
                            |                              
                            0-ACE                          


Chain B from PDB  Type:PROTEIN  Length:29
                                                            
               SCOP domains ----------------------------- SCOP domains
               CATH domains ----------------------------- CATH domains
               Pfam domains ----------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------- SAPs(SNPs)
                    PROSITE ----------------------------- PROSITE
                 Transcript ----------------------------- Transcript
                  4pnd B  2 NILQKIENILKKIENILWKIENILQKIEG 30
                                    11        21         


Chain C from PDB  Type:PROTEIN  Length:31
                                                              
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                  4pnd C  0 xGNILQKIENILKKIENILWKIENILQKIEG 30
                            |        9        19        29 
                            0-ACE                          


Chain D from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains ------------------------------ SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  4pnd D  1 GNILQKIENILKKIENILWKIENILQKIEG 30
                                    10        20        30


Chain E from PDB  Type:PROTEIN  Length:31
                                                              
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                  4pnd E  0 xGNILQKIENILKKIENILWKIENILQKIEG 30
                            |        9        19        29 
                            0-ACE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PND)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PND)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PND)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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