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(-) Description

Title :  CRYSTAL STRUCTURE OF AGGB, THE MINOR SUBUNIT OF AGGREGATIVE ADHERENCE FIMBRIAE TYPE I FROM THE ESCHERICHIA COLI O4H104
 
Authors :  N. A. Pakharukova, M. Tuitilla, A. V. Zavialov
Date :  07 May 14  (Deposition) - 01 Oct 14  (Release) - 10 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Ig-Like Fold, Beta Sandwich, Donor-Strand Complementation, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Berry, Y. Yang, N. Pakharukova, J. A. Garnett, W. C. Lee, E. Cota, J. Marchant, S. Roy, M. Tuittila, B. Liu, K. G. Inman, F. Ruiz-Perez, I. Mandomando, J. P. Nataro, A. V. Zavialov, S. Matthews
Structural Insight Into Host Recognition By Aggregative Adherence Fimbriae Of Enteroaggregative Escherichia Coli.
Plos Pathog. V. 10 04404 2014
PubMed-ID: 25232738  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1004404

(-) Compounds

Molecule 1 - PROTEIN AGGB
    Chains: B, A, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET101D
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: AGGB
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Variant: AI

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4PHX)

(-) Sites  (0, 0)

(no "Site" information available for 4PHX)

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:28 -A:116
2B:28 -B:116
3C:28 -C:116
4D:28 -D:116
5E:28 -E:116
6F:28 -F:116
7G:28 -G:116
8H:28 -H:116

(-) Cis Peptide Bonds  (10, 10)

Asymmetric/Biological Unit
No.Residues
1Thr B:10 -Leu B:11
2Val A:47 -Gly A:48
3Glu A:77 -Gly A:78
4Gly D:69 -Gly D:70
5Glu D:77 -Gly D:78
6Glu E:77 -Gly E:78
7Glu G:77 -Gly G:78
8Leu H:21 -Ala H:22
9Ala H:22 -Thr H:23
10Val H:47 -Gly H:48

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PHX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PHX)

(-) Exons   (0, 0)

(no "Exon" information available for 4PHX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....ee....eeeeeeee......eeeeee.........eeeee....eeeeeee....eeeee..eeeeeee....eeeeeeee...ee...eeeeeeeeeeee............eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4phx A   1 AEITLISHTGSQLRDGMKLATGRIACREPHDGFHIWINASQNGKVGHYIVQNNRHELKVKIGGGGWSSSLIEGQRGVYRQGEEKQAIFDIMSDGNQYSAPGEYIFSVSGECLISRQALERPPIKATETIRLTV 142
                                   |12        22        32        42        52   ||   65        75        85        95       105       115    || 129       139   
                                   8||                                          56|                                                         120|                 
                                   10|                                           60                                                          125                 
                                    12                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....ee....eeeeeeee.......eeeee..ee.....eeeee...eeeeeee...eeeee..eeeeee.....eeeeeeee...ee...eeeeeeeeeee...........eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4phx B   1 AEITLISHKTLSQLRDGMKLATGRIACREPHDGFHIWINASQNGKVGHYIVQNNHELKVKIGGGWSSSLIEGQRGVYRQGEEKQAIFDIMSDGNQYSAPGEYIFSVSGECLISRLERPPIKATETIRLTV 142
                                    10||      21        31        41        51   ||   65  ||    76        86        96       106       116   ||  132       142
                                     11|                                        55|      68|                                               120|               
                                      13                                         60       70                                                127               


Chain C from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee....ee....eeeeeeee.......eeeee.........eeeee....eeeeeee....eeeee..eeeeee.....eeeeeeee...ee...eeeeeeeeeee............eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4phx C   1 AEITLISHLGSQLRDGMKLATGRIACREPHDGFHIWINASQNGKVGHYIVQNNRHELKVKIGGGGWSSSLIEGQRGVYRQGEEKQAIFDIMSDGNQYSAPGEYIFSVSGECLISQALERPPIKATETIRLTV 142
                                   |12        22        32        42        52   ||   65        75        85        95       105       115   ||  130       140  
                                   8|                                           56|                                                        119|                 
                                   11                                            60                                                         125                 


Chain D from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....ee....eeeeeeee.......eeeee..ee.....eeeee....eeeeeee....eeeee..eeeeee.....eeeeeeee...ee....eeeeeeeeee...........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4phx D   1 AEITLISHTLGSQLRDGMKLATGRIACREPHDGFHIWINASQNGKVGHYIVQNNRHELKVKIGGGGWSSSLIEGQRGVYRQGEEKQAIFDIMSDGNQYSAPGEYIFSVSGECLISALERPPIKATETIRLTV 142
                                   |11        21        31        41        51    ||  64        74        84        94       104       114    || 130       140  
                                   8|                                            56|                                                        119|                
                                   10                                             60                                                         126                


Chain E from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..ee.....eeeeee......eeeeeee....eeee.....eeeeeee....eeeee..eeeeeee....eeeeeeee...ee.....eeeeeeeeee.............eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4phx E   1 AEITLIGSQLRDMKLATGRIACREPHDGFHIWINASQHYIVQNNRKHELKVKIGGGGWSSSLIEGQRGVYRQGEEKQAIFDIMSDGNQYSAPGEYIFSVSGECLISGNQALERPPIKATETIRLTV 142
                                 || 15 ||     26        36      ||51    ||  63        73        83        93       103       113     ||126       136      
                                 6|   17|                      43|     56|                                                         119|||                 
                                 12    19                       49      59                                                          121||                 
                                                                                                                                     123|                 
                                                                                                                                      125                 


Chain F from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee....ee...eeeeee......eeeeeee.ee....eeeee.....eeeeeee....ee.......eeee....eeeeeeee...ee.....eeeeeeeeee..........eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4phx F   1 AEITLISTGSQLRKLATGRIACREPHDGFHIWINASQNKVGHYIVQNNRKHELKVKIGGGGWSSSLIEGQGVYRQGEEKQAIFDIMSDGNQYSAPGEYIFSVSGECLISRLERPPIKATETIRLTV 142
                                  ||13  ||    26        36       |47        59        69        79|       90       100       110       120|      136      
                                  7||  16|                      44|        56|                  79|                                    120|               
                                  10|   20                       46         59                   81                                     127               
                                   12                                                                                                                     


Chain G from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.......ee....eee..eee......eeeeee......ee.........eee.....eeeee..eeeeeee.....ee..ee....ee...eeeeeeeeeee..........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4phx G   1 AEITLISHLGSQLRDGMKLATGRIACREPHDGFHIWINASQVGHYIVQNNHELKVKIGGGGWSSSLIEGQRGVYRQGEEKQAIFDIMSDGNQYSAGEYIFSVSGECLISRLERPPIKATETIRLTV 142
                                   |12        22        32        42||      55|       69        79        89        99    || 110       120|      136      
                                   8|                              43|      55|                                         104|           120|               
                                   11                               47       60                                          106            127               


Chain H from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.............eeeee......eeeee........eeeee......eeeeeee....eeee....eee.....eeeeeeee........eeeeeeeeee........eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 4phx H   1 AEITLIHTLGSQLRDGMLATGRIACREPHGFHIWINSQNGKVGHYIVQNNRETHELKVKIGGGGWSSSLIGQGVYRQGEEKQAIFDIMSDGNQYSAGEYIFSVSGECLISRLPPATETIRLTV 142
                                 |||12      ||23        34     || 45        55  ||    66        76|||     88        98     ||109       119|||||  139   
                                 6||       19|         32|    40|              58|              76|||                    104|           120||||        
                                  8|        21          34     42               60               78||                     106            127|||        
                                  10                                                              79|                                     130||        
                                                                                                   81                                      131|        
                                                                                                                                            134
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PHX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PHX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PHX)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4PHX)

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Asymmetric/Biological Unit
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  Sites
(no "Sites" information available for 4phx)
 
  Cis Peptide Bonds
    Ala H:22 - Thr H:23   [ RasMol ]  
    Glu A:77 - Gly A:78   [ RasMol ]  
    Glu D:77 - Gly D:78   [ RasMol ]  
    Glu E:77 - Gly E:78   [ RasMol ]  
    Glu G:77 - Gly G:78   [ RasMol ]  
    Gly D:69 - Gly D:70   [ RasMol ]  
    Leu H:21 - Ala H:22   [ RasMol ]  
    Thr B:10 - Leu B:11   [ RasMol ]  
    Val A:47 - Gly A:48   [ RasMol ]  
    Val H:47 - Gly H:48   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

4or1
4ph8 4PH8 IS A MAJOR SUBUNIT OF AGGREGATIVE ADHERENCE FIMBRIAE TYPE I FROM THE ESCHERICHIA COLI O4H104.