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(-) Description

Title :  SACCHAROMYCES CEREVISIAE PHOSPHOGLYCERATE MUTASE
 
Authors :  D. J. Rigden, D. Alexeev, S. E. V. Phillips, L. A. Fothergill-Gilmore
Date :  25 Apr 97  (Deposition) - 29 Oct 97  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Transferase (Phosphoryl), Glycolytic Enzyme, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. J. Rigden, D. Alexeev, S. E. Phillips, L. A. Fothergill-Gilmore
The 2. 3 A X-Ray Crystal Structure Of S. Cerevisiae Phosphoglycerate Mutase.
J. Mol. Biol. V. 276 449 1998
PubMed-ID: 9512715  |  Reference-DOI: 10.1006/JMBI.1997.1554
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHOSPHOGLYCERATE MUTASE 1
    Cellular Location: CYTOPLASM
    Cell Line: 293
    Chains: A, B, C, D
    EC Number: 5.4.2.1
    Engineered: YES
    Expression System: SACCHAROMYCES CEREVISIAE
    Expression System Common: BAKER'S YEAST
    Expression System Gene: GPM
    Expression System Strain: S150-GPM::HIS3
    Expression System Taxid: 4932
    Expression System Vector: PVT-GPM
    Expression System Vector Type: PHAGEMID
    Gene: GPM
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: S150

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4PGM)

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1CICUNKNOWNHIS A:8 , HIS A:181 , ARG A:7 , ARG A:59CATALYTIC SITE. HIS 8 PHOSPHORYLATION IS REQUIRED TO PRIME THE ENZYME.

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PGM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PGM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PGM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PGM)

(-) Exons   (0, 0)

(no "Exon" information available for 4PGM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:235
                                                                                                                                                                                                                                                                           
               SCOP domains d4pgma_ A: Phosphoglycerate mutase                                                                                                                                                                                                          SCOP domains
               CATH domains 4pgmA00 A:1-235 Phosphoglycerate mutase-like                                                                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....................hhhhhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhh.....eeee.hhh.....hhh....hhhhhhh..hhhhhhhhh....................hhh.............hhhhhhhhhhhhhh.hhhhhhh...eeeee.hhhhhhhhhhhh...hhhhhh........eeee...............hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pgm A   1 PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELDENLKPSKPSYYLDPEAAAA 235
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230     


Chain B from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains d4pgmb_ B: Phosphoglycerate mutase                                                                                                                                                                                                           SCOP domains
               CATH domains 4pgmB00 B:1-236 Phosphoglycerate mutase-like                                                                                                                                                                                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhh.............hhhhhhhhhhhhhhhh......eeee...hhhhhhhhhhhhhh.....eeee.hhh.....hhh....hhhhhhh..hhhhhhhhh....................hhh.............hhhhhhhhhhhhh.hhhhhhh...eeeeee.hhhhhhhhhhhh......hhh........eeee...............hhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pgm B   1 PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELDENLKPSKPSYYLDPEAAAAG 236
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230      


Chain C from PDB  Type:PROTEIN  Length:234
                                                                                                                                                                                                                                                                          
               SCOP domains d4pgmc_ C: Phosphoglycerate mutase                                                                                                                                                                                                         SCOP domains
               CATH domains 4pgmC00 C:1-234 Phosphoglycerate mutase-like                                                                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee....hhhh.............hhhhhhhhhhhhhhhh......eeee...hhhhhhhhhhhhhh.....eeee.hhh.....hhh....hhhhhhh..hhhhhhhhh....................hhh....hhh......hhhhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhh......hhh........eeee...............hhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pgm C   1 PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELDENLKPSKPSYYLDPEAAA 234
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230    


Chain D from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains d4pgmd_ D: Phosphoglycerate mutase                                                                                                                                                                                                           SCOP domains
               CATH domains 4pgmD00 D:1-236 Phosphoglycerate mutase-like                                                                                                                                                                                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....................hhhhhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhh.....eeee.hhh.....hhh....hhhhhhh..hhhhhhhhh....................hhh.............hhhhhhhhhhhhhh.hhhhhhh...eeeee.hhhhhhhhhhhh...hhhhhh........eeee...............hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pgm D   1 PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELDENLKPSKPSYYLDPEAAAAG 236
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PGM)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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        PMG1_YEAST | P00950: 1bq3 1bq4 1qhf 3pgm 5pgm

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