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(-) Description

Title :  THE STRUCTURE OF MONO-ACETYLATED SAHH
 
Authors :  J. M. Kavran, Y. Wang, P. A. Cole, D. J. Leahy
Date :  01 May 14  (Deposition) - 01 Oct 14  (Release) - 19 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.59
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Hydrolyase Acetylation Sahh Semi-Synthetic, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Wang, J. M. Kavran, Z. Chen, K. R. Karukurichi, D. J. Leahy, P. A. Cole
Regulation Of S-Adenosylhomocysteine Hydrolase By Lysine Acetylation.
J. Biol. Chem. V. 289 31361 2014
PubMed-ID: 25248746  |  Reference-DOI: 10.1074/JBC.M114.597153

(-) Compounds

Molecule 1 - ADENOSYLHOMOCYSTEINASE
    Chains: A, B
    EC Number: 3.3.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: AHCY, SAHH
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ADOHCYASE,S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1ADN2Ligand/IonADENOSINE
2ALY2Mod. Amino AcidN(6)-ACETYLLYSINE
3NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 1 (3, 12)
No.NameCountTypeFull Name
1ADN4Ligand/IonADENOSINE
2ALY4Mod. Amino AcidN(6)-ACETYLLYSINE
3NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:157 , THR A:158 , THR A:159 , ASN A:191 , GLY A:220 , GLY A:222 , ASP A:223 , VAL A:224 , THR A:242 , GLU A:243 , ILE A:244 , ASP A:245 , ASN A:248 , THR A:275 , THR A:276 , GLY A:277 , ILE A:281 , ILE A:299 , GLY A:300 , HIS A:301 , ASN A:346 , HIS A:353 , GLN A:413 , LYS A:426 , TYR A:430 , ADN A:502 , HOH A:606binding site for residue NAD A 501
2AC2SOFTWAREHIS A:55 , THR A:57 , GLU A:59 , THR A:60 , GLU A:156 , THR A:157 , LYS A:186 , ASP A:190 , HIS A:301 , LEU A:344 , MET A:351 , HIS A:353 , MET A:358 , PHE A:362 , NAD A:501binding site for residue ADN A 502
3AC3SOFTWARETHR B:157 , THR B:158 , THR B:159 , ASN B:191 , GLY B:220 , GLY B:222 , ASP B:223 , VAL B:224 , THR B:242 , GLU B:243 , ILE B:244 , ASN B:248 , THR B:275 , THR B:276 , GLY B:277 , CYS B:278 , ILE B:281 , ILE B:299 , GLY B:300 , HIS B:301 , ASN B:346 , HIS B:353 , LYS B:426 , TYR B:430 , ADN B:502binding site for residue NAD B 501
4AC4SOFTWAREHIS B:55 , THR B:57 , GLU B:59 , THR B:60 , ASP B:131 , GLU B:156 , THR B:157 , LYS B:186 , ASP B:190 , HIS B:301 , MET B:351 , HIS B:353 , MET B:358 , NAD B:501binding site for residue ADN B 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PGF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PGF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PGF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PGF)

(-) Exons   (0, 0)

(no "Exon" information available for 4PGF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:430
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhh.hhhhhhhhhhhh........eeeee...hhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhh..ee.....hhhhhhhhhhh..ee..ee..eeee..hhhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhhh......eee...hhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh..eeeee..hhhhhhhhhhh..ee.hhhhhh....eeee........hhhhhh.....eeeee........hhhhhhhhh.eeeeee..eeeee.....eeeee.hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhh...........hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pgf A   3 DKLPYKVADIGLAAWGRKALDIAENEMPGLMRMRERYSASKPLKGARIAGCLHMTVETAVLIETLVTLGAEVQWSSCNIFSTQNHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTLYFKDGPLNMILDDGGDLTNLIHTKYPQLLPGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYRLKNGRRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVHFLPKKLDEAVACAHLGKLNVKLTkLTEKQAQYLGMSCDGPFKPDHYRY 432
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402     | 412       422       432
                                                                                                                                                                                                                                                                                                                                                                                                                                               408-ALY                    


Chain B from PDB  Type:PROTEIN  Length:428
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhh........eeeee...hhhhhhhhhhhhhh..eeeee.......hhhhhhhhhh....ee.....hhhhhhhhhhhh.ee..ee..eeee..hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhh......eee...hhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh..eeeee..hhhhhhhhhh...ee.hhhhhh....eeee........hhhhhh.....eeeee........hhhhhhhhh.eeeeee..eeeee.....eeeee.hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......eee.hhhhhhhhhhh............hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pgf B   5 LPYKVADIGLAAWGRKALDIAENEMPGLMRMRERYSASKPLKGARIAGCLHMTVETAVLIETLVTLGAEVQWSSCNIFSTQNHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTLYFKDGPLNMILDDGGDLTNLIHTKYPQLLPGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYRLKNGRRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVHFLPKKLDEAVACAHLGKLNVKLTkLTEKQAQYLGMSCDGPFKPDHYRY 432
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404   |   414       424        
                                                                                                                                                                                                                                                                                                                                                                                                                                             408-ALY
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PGF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PGF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PGF)

(-) Gene Ontology  (22, 22)

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  SAHH_HUMAN | P23526
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SAHH_HUMAN | P23526: 1a7a 1li4 3nj4 4pfj 4yvf 5w49 5w4b

(-) Related Entries Specified in the PDB File

4pfj