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(-) Description

Title :  FADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM VIBRIO CHOLERAE, IN COMPLEX WITH OLEOYL-COA
 
Authors :  W. Shi, F. J. Kull
Date :  19 Apr 14  (Deposition) - 18 Feb 15  (Release) - 25 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transcription Regulator, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Shi, G. Kovacikova, W. Lin, R. K. Taylor, K. Skorupski, F. J. Kull
The 40-Residue Insertion In Vibrio Cholerae Fadr Facilitate Binding Of An Additional Fatty Acyl-Coa Ligand.
Nat Commun V. 6 6032 2015
PubMed-ID: 25607896  |  Reference-DOI: 10.1038/NCOMMS7032

(-) Compounds

Molecule 1 - FATTY ACID METABOLISM REGULATOR PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTXB1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FADR, VC_1900
    Organism Scientific: VIBRIO CHOLERAE SEROTYPE O1 (ATCC 39315 / EL TOR INABA N16961)
    Organism Taxid: 243277
    Strain: ATCC 39315 / EL TOR INABA N16961

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
13VV4Ligand/IonS-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]-3,5,9-TRIHYDROXY-8,8-DIMETHYL-3,5-DIOXIDO-10,14-DIOXO-2,4,6-TRIOXA-11,15-DIAZA-3LAMBDA~5~,5LAMBDA~5~-DIPHOSPHAHEPTADECAN-17-YL} (9Z)-OCTADEC-9-ENETHIOATE(NON-PREFERRED NAME)

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:101 , LEU A:102 , ALA A:103 , ARG A:105 , THR A:106 , ILE A:108 , SER A:134 , ALA A:137 , ALA A:150 , SER A:151 , PRO A:152 , ASP A:185 , LEU A:208 , TYR A:212 , GLY A:216 , TYR A:219 , PHE A:220 , ARG A:253 , GLY A:256 , SER A:259 , GLY A:260 , TRP A:263 , TYR B:115 , LYS B:118 , ARG B:245binding site for residue 3VV A 301
2AC2SOFTWAREASN A:130 , SER A:134 , TYR A:153 , LYS A:156 , TYR A:184 , ARG A:191 , PHE A:194 , HIS A:195 , ILE A:200 , GLY A:207 , TRP B:21 , PRO B:27 , ILE B:82 , 3VV B:302binding site for residue 3VV A 302
3AC3SOFTWAREILE A:111 , ARG A:114 , TYR A:115 , ILE A:204 , ARG A:245 , LEU B:101 , LEU B:102 , ALA B:104 , ARG B:105 , THR B:106 , ILE B:108 , PHE B:205 , TYR B:212 , TYR B:219 , ARG B:253 , GLY B:256 , ILE B:257 , SER B:259 , GLY B:260binding site for residue 3VV B 301
4AC4SOFTWAREPRO A:27 , MET A:75 , 3VV A:302 , ARG B:126 , ASN B:130 , SER B:134 , TYR B:153 , TYR B:184 , ARG B:191 , PHE B:194 , HIS B:195 , GLN B:199 , ILE B:204 , LEU B:208binding site for residue 3VV B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PDK)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Thr A:77 -Ser A:78
2Asp A:84 -Thr A:85
3Glu A:92 -Asn A:93
4Thr B:269 -Leu B:270

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PDK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PDK)

(-) Exons   (0, 0)

(no "Exon" information available for 4PDK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:259
                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh...........hhhhhhhh.....hhhhhhhhhhhhh....................................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pdk A   8 PAGFAEKYIIESIWNGRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNQFMETSGLHILDTLMTLDAENATSIVEDLLAARTNISPIFMRYAFKLNKESAERIMINVIESCEALVNAPSWDAFIAASPYAEKIQQHVKEDSEKDELKRQEILIAKTFNFYDYMLFQRLAFHSGNQIYGLIFNGLKKLYDRVGSYYFSNPQARELAMEFYRQLLAVCQSGEREHLPQVIRQYGIASGHIWNQM 266
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257         


Chain B from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh..........hhhhhhhhhh.hhhhhhhhhhhh........................................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pdk B   8 PAGFAEKYIIESIWNGRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNQFMETSGLHILDTLMTLDAENATSIVEDLLAARTNISPIFMRYAFKLNKESAERIMINVIESCEALVNAPSWDAFIAASPYAEKIQQHVKEDSEKDELKRQEILIAKTFNFYDYMLFQRLAFHSGNQIYGLIFNGLKKLYDRVGSYYFSNPQARELAMEFYRQLLAVCQSGEREHLPQVIRQYGIASGHIWNQMKMTLPS 272
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PDK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PDK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PDK)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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    Glu A:92 - Asn A:93   [ RasMol ]  
    Thr A:77 - Ser A:78   [ RasMol ]  
    Thr B:269 - Leu B:270   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FADR_VIBCH | Q9KQU8: 4p9u

(-) Related Entries Specified in the PDB File

4p96 4P96 CONTAINS THE SAME PROTEIN IN THE APO-FORM.
4p9u 4P9U CONTAINS THE SAME PROTEIN COMPLEXED WITH DNA.