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(-) Description

Title :  ELONGATION FACTOR TU:TS COMPLEX WITH A BOUND PHOSPHATE
 
Authors :  S. S. Thirup
Date :  14 Apr 14  (Deposition) - 06 May 15  (Release) - 15 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  G:Gef Complex, Elongation Factor, Protein Synthesis, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. S. Thirup, L. B. Van, T. K. Nielsen, C. R. Knudsen
Structural Outline Of The Detailed Mechanism For Elongation Factor Ts-Mediated Guanine Nucleotide Exchange On Elongatio Factor Tu.
J. Struct. Biol. V. 191 10 2015
PubMed-ID: 26073967  |  Reference-DOI: 10.1016/J.JSB.2015.06.011

(-) Compounds

Molecule 1 - ELONGATION FACTOR TU
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TUFA, TUF, ECDH10B_3514
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 316385
    Strain: K12 / DH10B
    Synonym: EF-TU
 
Molecule 2 - ELONGATION FACTOR TS
    Chains: C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TSF, BN17_45931, ECS0172, LF82_2325
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: EF-TS

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric Unit (4, 8)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2PB2Ligand/IonLEAD (II) ION
3PO42Ligand/IonPHOSPHATE ION
4TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (3, 4)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2PB-1Ligand/IonLEAD (II) ION
3PO41Ligand/IonPHOSPHATE ION
4TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2PB-1Ligand/IonLEAD (II) ION
3PO41Ligand/IonPHOSPHATE ION
4TRS-1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:20 , ASP A:21 , GLY A:23 , LYS A:24 , THR A:25 , THR A:26 , HOH A:604 , HOH A:681binding site for residue PO4 A 401
2AC2SOFTWAREARG A:377 , GLY A:380 , ARG A:381 , THR A:382 , HOH A:597binding site for residue GOL A 402
3AC3SOFTWAREVAL B:20 , ASP B:21 , GLY B:23 , LYS B:24 , THR B:25 , THR B:26 , HOH B:592 , HOH B:611 , HOH B:655binding site for residue PO4 B 401
4AC4SOFTWAREASP C:199 , HOH C:667 , HOH C:749 , GLU D:188binding site for residue PB C 301
5AC5SOFTWAREGLU C:188 , ASP D:199binding site for residue PB C 302
6AC6SOFTWAREGLN C:203 , SER C:204 , HOH C:425 , HOH C:504 , HOH C:562 , HOH C:594 , GLU D:178binding site for residue GOL C 303
7AC7SOFTWAREASN C:30 , ILE C:180 , ASP C:184 , HOH C:433 , HOH C:447 , HOH C:498 , HOH C:593 , HOH C:659 , HOH D:521binding site for residue TRS C 304
8AC8SOFTWAREGLU C:178 , ILE C:180 , HOH C:479 , GLN D:203 , SER D:204 , HOH D:479 , HOH D:521 , HOH D:538binding site for residue GOL D 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PC1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PC1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PC1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PC1)

(-) Exons   (0, 0)

(no "Exon" information available for 4PC1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:363
                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee....hhhhhhhhhhhhhhhhhh...eeee....eeeeee..hhhhhhhhhhhh.....eeeeeee.......hhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhhhhhhhhhhh..hhhhh.eee.hhhhhhh.hhhhhhhhhhhhhhhhhhh....hhhhh..eee..eeee.....eeeeee....eee...eeeee.....eeeeeeeeee..eee.eee...eeeeee...hhhhh....eee......eeeeeeeeeee.hhhhh............eeee..eeeeeeee............eeeeeeeeeeeee.....eeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pc1 A   8 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG 393
                                    17        27        37   ||   70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390   
                                                            41|                                                                                                                                                                                                                                                                                                                                        
                                                             65                                                                                                                                                                                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:363
                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee....hhhhhhhhhhhhhhhhhh...eeee....eeeeee..hhhhhhhhhhh......eeeeeee.......hhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhhhhhhhhhhh..hhhhh.eee.hhhhhhh.hhhhhhhhhhhhhhhhhhh....hhhhh..eee..eeee.....eeeeee....eee...eeeee.....eeeeeeeeee......eee...eeeeee...hhhhh....eee......eeeeeeeeeee..................eeee..eeeeeeee............eeeeeeeeeeeee.....eeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pc1 B   8 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG 393
                                    17        27        37   ||   70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390   
                                                            41|                                                                                                                                                                                                                                                                                                                                        
                                                             65                                                                                                                                                                                                                                                                                                                                        


Chain C from PDB  Type:PROTEIN  Length:280
                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.....eeeeeeeee..eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...eeeeeeeee..eeeeeee...eeeeeeee..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhh..eeeeeeeee..........hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pc1 C   1 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEERVALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAAMSK 280
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280


Chain D from PDB  Type:PROTEIN  Length:278
                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.....eeeeeeeee..eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...eeeeeeeee..eeeeeee...eeeeeeee..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh....ee..eeeeehhhhhhhh..eeeeeeeee..........hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pc1 D   2 EITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEERVALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAAMS 279
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PC1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PC1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PC1)

(-) Gene Ontology  (5, 5)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        A0A0M3KKV1_E | A0A0M3KKV1: 4pc2 4pc6
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(-) Related Entries Specified in the PDB File

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