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(-) Description

Title :  STRUCTURE OF THE HUMAN RBAP48-MTA1(670-695) COMPLEX
 
Authors :  A. Murthy, X. Y. Pei, A. A. Watson, A. P. G. Silva, J. P. Mackay, E. D. Laue
Date :  14 Apr 14  (Deposition) - 11 Jun 14  (Release) - 04 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Nurd, Sub-Complex, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. S. Alqarni, A. Murthy, W. Zhang, M. R. Przewloka, A. P. Silva, A. A. Watson, S. Lejon, X. Y. Pei, A. H. Smits, S. L. Kloet, H. Wang, N. E. Shepherd, P. H. Stokes, G. A. Blobel, M. Vermeulen, D. M. Glover, J. P. Mackay, E. D. Laue
Insight Into The Architecture Of The Nurd Complex: Structur Of The Rbap48-Mta1 Sub-Complex.
J. Biol. Chem. V. 289 21844 2014
PubMed-ID: 24920672  |  Reference-DOI: 10.1074/JBC.M114.558940

(-) Compounds

Molecule 1 - HISTONE-BINDING PROTEIN RBBP4
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFBDM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Gene: RBBP4, RBAP48
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT C,CAF-1 SUBUNIT C, CHROMATIN ASSEMBLY FACTOR I P48 SUBUNIT,CAF-I P48,NUCLEOSOME- REMODELING FACTOR SUBUNIT RBAP48,RETINOBLASTOMA-BINDING PROTEIN 4, RBBP-4,RETINOBLASTOMA-BINDING PROTEIN P48
 
Molecule 2 - METASTASIS-ASSOCIATED PROTEIN MTA1
    Chains: B
    Engineered: YES
    Fragment: RESIDUES 653-678
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4PBZ)

(-) Sites  (0, 0)

(no "Site" information available for 4PBZ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PBZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PBZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PBZ)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:386
                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeee........eeeeeee......eeeeeeeee.......eeeeeeeeeee...eeeeeeeee.....eeeee..eeeeeeee.....eeeee.hhh.............eeee........eee......eeeee.....eeeee..........ee..eee......eeeeee......eeeeee...eeeeee..........eeee.....eeeeee......eeeeee...eeeeee........eeee.....eeeeee......eeeeee....eeeee.hhh....hhhhhhhh...eeeee......eeeeee......eeeeee...eeeeeeehhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pbz A   2 ADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYND 411
                                    11        21        31        41        51        61        71        81       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405      
                                                                                                                  89|                                                                                                                                                                                                                                                                                                         
                                                                                                                  114                                                                                                                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:22
                                                      
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                 4pbz B 670 KLLSSSETKRAARRPYKPIALR 691
                                   679       689
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PBZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PBZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PBZ)

(-) Gene Ontology  (62, 69)

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  MTA1_HUMAN | Q13330
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  RBBP4_HUMAN | Q09028
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  MTA1_HUMAN | Q13330
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MTA1_HUMAN | Q13330: 4bkx 4pby 4pc0 5fxy 5icn
        RBBP4_HUMAN | Q09028: 2xu7 3gfc 4pby 4pc0 4r7a 5fxy

(-) Related Entries Specified in the PDB File

4pby 4PBY CONTAINS THE SAME PROTEIN RBAP48 IN COMPLEX WITH A SIMILAR PEPTIDE OF MTA1 BUT OF DIFFERENT LENGTH