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(-) Description

Title :  THE CATALYTIC FRAGMENT OF POLY(ADP-RIBOSE) POLYMERASE COMPLEXED WITH 8-HYDROXY-2-METHYL-3-HYDRO-QUINAZOLIN-4-ONE
 
Authors :  A. Ruf, G. E. Schulz
Date :  25 Nov 97  (Deposition) - 27 May 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Glycosyltransferase, Nad(+) Adp- Ribosyltransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ruf, G. De Murcia, G. E. Schulz
Inhibitor And Nad+ Binding To Poly(Adp-Ribose) Polymerase As Derived From Crystal Structures And Homology Modeling.
Biochemistry V. 37 3893 1998
PubMed-ID: 9521710  |  Reference-DOI: 10.1021/BI972383S
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - POLY(ADP-RIBOSE) POLYMERASE
    Cell Line: SF9
    Chains: A
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PVLPE
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector: BACULOVIRUS
    Expression System Vector Type: VIRUS
    Fragment: CATALYTIC FRAGMENT
    Organelle: NUCLEUS
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
    Synonym: PARP-CF, POLY(ADP-RIBOSE) TRANSFERASE, POLY (ADP- RIBOSE) SYNTHETASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1NU11Ligand/Ion8-HYDROXY-2-METHYL-3-HYDRO-QUINAZOLIN-4-ONE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:862 , GLY A:863 , TYR A:896 , PHE A:897 , LYS A:903 , SER A:904 , TYR A:907BINDING SITE FOR RESIDUE NU1 A 1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PAX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PAX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PAX)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4PAX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:350
                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4paxa1 A:662-796 Domain of poly(ADP-ribose) polymerase                                                                                d4paxa2 A:797-1011 Poly(ADP-ribose) polymerase, C-terminal domain                                                                                                                                                       SCOP domains
               CATH domains 4paxA01 A:662-797 Poly(ADP-ribose) Polymerase, domain 1                                                                                 4paxA02 A:798-1010  [code=3.90.228.10, no name defined]                                                                                                                                                              - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhh..hhhhhhhhhh.........hhh..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh.eeeee.....hhhhhhhhhhhh........eeeeeeeeeeeee..hhhh.hhhhh...eeeeeeee.hhhhhhhhhh..........hhh......eee...hhhhhhhh.......eeeeeeeeee...eeee..............eeee...eee.hhh.eee..eee....eee...........eeee..hhheeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4pax A  662 KSKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVSDGGSESQILDLSNRFYTLIPHDFGMKKPPLLSNLEYIQAKVQMLDNLLDIEVAYSLLRGGNEDGDKDPIDINYEKLRTDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFRIEREGESQRYKPFKQLHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQADPIGLILLGEVALGNMYELKNASHITKLPKGKHSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNYKT 1011
                                   671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PAX)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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        PARP1_CHICK | P26446: 1a26 1efy 1pax 2paw 2pax 3pax

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