Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  IONIC INTERACTIONS WITH PARVALBUMINS. CRYSTAL STRUCTURE DETERMINATION OF PIKE 4.10 PARVALBUMIN IN FOUR DIFFERENT IONIC ENVIRONMENTS
 
Authors :  J. P. Declercq, B. Tinant, J. Parello, J. Rambaud
Date :  08 Nov 90  (Deposition) - 15 Jan 92  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Calcium Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. P. Declercq, B. Tinant, J. Parello, J. Rambaud
Ionic Interactions With Parvalbumins. Crystal Structure Determination Of Pike 4. 10 Parvalbumin In Four Different Ionic Environments.
J. Mol. Biol. V. 220 1017 1991
PubMed-ID: 1880797  |  Reference-DOI: 10.1016/0022-2836(91)90369-H
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PARVALBUMIN
    ChainsA
    EngineeredYES
    Organism CommonNORTHERN PIKE
    Organism ScientificESOX LUCIUS
    Organism Taxid8010

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2CA1Ligand/IonCALCIUM ION
3MG2Ligand/IonMAGNESIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:90 , ASP A:92 , ASP A:94 , MET A:96 , GLU A:101 , HOH A:246BINDING SITE FOR RESIDUE MG A 110
2AC2SOFTWAREASP A:51 , ASP A:53 , SER A:55 , PHE A:57 , GLU A:59 , GLU A:62BINDING SITE FOR RESIDUE CA A 111
3AC3SOFTWAREASP A:53 , HOH A:230 , HOH A:231 , HOH A:256 , HOH A:257 , HOH A:287BINDING SITE FOR RESIDUE MG A 223
4CDAUTHORASP A:51 , GLN A:52 , ASP A:53 , LYS A:54 , SER A:55 , GLY A:56 , PHE A:57 , ILE A:58 , GLU A:59 , GLU A:60 , ASP A:61 , GLU A:62CALCIUM BINDING SITE
5EFAUTHORASP A:90 , LYS A:91 , ASP A:92 , GLY A:93 , ASP A:94 , GLY A:95 , MET A:96 , ILE A:97 , GLY A:98 , VAL A:99 , ASP A:100 , GLU A:101MAGNESIUM BINDING SITE

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PAL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PAL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PAL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PAL)

(-) Exons   (0, 0)

(no "Exon" information available for 4PAL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains d4pala_ A: Parvalbumin                                                                                       SCOP domains
               CATH domains -4palA00 A:1-108 EF-hand                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhh........hhhhhhhh......hhhhhhhhhhh.........hhhhhhhhhhh........hhhhhhhhhhh.........hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 4pal A   0 xSFAGLKDADVAAALAACSAADSFKHKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMIKA 108
                            |   ||  10        20        30        40        50        60        70        80        90       100        
                            |   4|                                                                                                      
                            0-ACE6                                                                                                      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PAL)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ACE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    CD  [ RasMol ]  +environment [ RasMol ]
    EF  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4pal)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4pal
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PRVB_ESOLU | P02619
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  PRVB_ESOLU | P02619
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PRVB_ESOLU | P026191pal 1pvb 2pal 2pvb 3pal

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4PAL)