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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF PA PROTEIN FROM INFLUENZA STRAIN H7N9
 
Authors :  J. W. Fairman, S. O. Moen, M. C. Clifton, T. E. Edwards, D. Lorimer, Seatt Structural Genomics Center For Infectious Disease (Ssgcid)
Date :  02 Apr 14  (Deposition) - 30 Jul 14  (Release) - 20 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Pa Protein Influenza H7N9 Polymerase, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. O. Moen, J. Abendroth, J. W. Fairman, R. O. Baydo, J. Bullen, J. L. Kirkwood, S. R. Barnes, A. C. Raymond, D. W. Begley, G. Henkel, K. Mccormack, V. C. Tam, I. Phan, B. L. Staker, R. Stacy, P. J. Myler, D. Lorimer, T. E. Edwards
Structural Analysis Of H1N1 And H7N9 Influenza A Virus Pa I The Absence Of Pb1.
Sci Rep V. 4 5944 2014
PubMed-ID: 25089892  |  Reference-DOI: 10.1038/SREP05944

(-) Compounds

Molecule 1 - POLYMERASE PA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: PA
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 1322048
    Strain: A/CHICKEN/ZHEJIANG/DTID-ZJU01/2013(H7N9)

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:281 , PHE A:282 , ASN A:466 , SER A:648 , LEU A:649binding site for residue GOL A 801

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4P9A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4P9A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4P9A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4P9A)

(-) Exons   (0, 0)

(no "Exon" information available for 4P9A)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:383
                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................eeee....hhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhhhhhhhhhh.........ee...hhhhhhhh.........hhhhhhhhhhhh...........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee.....eeeeeeeeeee..........eeeeeeeeee......hhhhhh..eeeeeeeeeeee..eeeeeeeeeeeeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh....hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p9a A 266 RPLRLPNGPPCSQRSKFLLMDALKLSIEDPEGIPLYDAIKCMKTFFGWKEPNIIKPHEKGINPNYLLTWKQVLAELQDIENEEKIPRTKNMKKTSQLKWALGEPEPRSLACWIQNEFNKACELTDSSWVELDEHIASMRRNYFTAEVSHCRATEYIMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDVVNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAVGQVSRPMFLYVRTNGTSKIKMKWGMEMRRCLLQSLQQIESMIEAELTKEFFENGSIGKVCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNTFDLEGLYEAIEECLINDPWVLLNASWFNSFLTH 713
                                   275       285       295|      309       319       329       339       349       359       369  ||   404       414       424 ||    443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593     ||610   ||  636       646       656       666       680       690       700       710   
                                                       295|                                                                     372|                         426|                                                                                                                                                                599|    614|                                         675|                                 
                                                        300                                                                      398                          436                                                                                                                                                                 607     631                                          680
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4P9A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4P9A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4P9A)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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