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(-) Description

Title :  STRUCTURE OF ENGINEERED PYRR PROTEIN (VIOLET PYRR)
 
Authors :  T. Perica, Y. Kondo, S. Tiwari, S. Mclaughlin, A. Steward, N. Reuter, J. S. A. Teichmann
Date :  30 Mar 14  (Deposition) - 17 Dec 14  (Release) - 31 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Rna Binding Proteins, Reconstructed Amino Acid Sequence, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Perica, Y. Kondo, S. P. Tiwari, S. H. Mclaughlin, K. R. Kemplen, X. Zhang, A. Steward, N. Reuter, J. Clarke, S. A. Teichmann
Evolution Of Oligomeric State Through Allosteric Pathways That Mimic Ligand Binding.
Science V. 346 54346 2014
PubMed-ID: 25525255  |  Reference-DOI: 10.1126/SCIENCE.1254346

(-) Compounds

Molecule 1 - BIFUNCTIONAL PROTEIN PYRR
    Chains: A
    EC Number: 2.4.2.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: C41
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synonym: PYRIMIDINE OPERON REGULATORY PROTEIN PYRR

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2SO42Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:41 , ASP A:105 , VAL A:107 , LEU A:108 , TYR A:109 , THR A:110 , GLY A:111 , ARG A:112 , THR A:113 , VAL A:114 , HOH A:380binding site for residue SO4 A 201
2AC2SOFTWAREASP A:10 , GLU A:11 , ARG A:15 , ARG A:126 , ARG A:174 , HOH A:315 , HOH A:330binding site for residue SO4 A 202
3AC3SOFTWAREASP A:83 , ARG A:112binding site for residue GOL A 203
4AC4SOFTWAREASP A:137 , ARG A:141 , ARG A:146 , HOH A:414binding site for residue GOL A 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4P84)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4P84)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4P84)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4P84)

(-) Exons   (0, 0)

(no "Exon" information available for 4P84)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeehhhhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhhhhh....eeeeeeeee..........eeeeeeee........eeeeeeeee..hhhhhhhhhhhhhhh...eeeeeeeee...........eeeee......eeeeeehhhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4p84 A   1 GSNEKAVILDEQAIRRALTRIAHEIIERNKGVDNCVLVGIKTRGIYLAKRLAERIEQIEGKPVPVGEIDITLYRDDLSVTSNDEPLVKGTDIPVDITDKKVILVDDVLYTGRTVRAGMDALMDLGRPSQIQLAVLVDRGHRELPIRADYVGKNVPTSKSERIVVQLDEVDQNDRVSIYEN 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4P84)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4P84)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4P84)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4P84)

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  4p84
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 Related Entries

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