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(-) Description

Title :  VALA (2-EPI-5-EPI-VALIOLONE SYNTHASE) FROM STREPTOMYCES HYGROSCOPICUS SUBSP. JINGGANGENSIS 5008 WITH NAD+ AND ZN2+ BOUND
 
Authors :  K. M. Kean, S. J. Codding, P. A. Karplus
Date :  13 Mar 14  (Deposition) - 30 Jul 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Lyase, Sugar Phosphate Cyclase, Pseudoglycoside, Sedoheptulose 7- Phosphate (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. M. Kean, S. J. Codding, S. Asamizu, T. Mahmud, P. A. Karplus
Structure Of A Sedoheptulose 7-Phosphate Cyclase: Vala From Streptomyces Hygroscopicus.
Biochemistry V. 53 4250 2014
PubMed-ID: 24832673  |  Reference-DOI: 10.1021/BI5003508

(-) Compounds

Molecule 1 - CYCLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SHJG_0276
    Organism Scientific: STREPTOMYCES HYGROSCOPICUS SUBSP. JINGGANGENSIS
    Organism Taxid: 1133850
    Strain: 5008

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
3ZN1Ligand/IonZINC ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1NAI2Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
2PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
3ZN-1Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:213 , HIS A:284 , HIS A:300 , HOH A:707binding site for residue ZN A 501
2AC2SOFTWAREASP A:70 , THR A:72 , VAL A:73 , LEU A:76 , GLU A:101 , LYS A:104 , GLY A:133 , GLY A:134 , VAL A:135 , ASP A:138 , THR A:158 , THR A:159 , ILE A:161 , ASP A:165 , ALA A:166 , LYS A:171 , LYS A:180 , ASN A:181 , PHE A:198 , THR A:201 , HIS A:206 , ASN A:209 , HOH A:663 , HOH A:667 , HOH A:714 , HOH A:724 , HOH A:728 , HOH A:770binding site for residue NAI A 502
3AC3SOFTWARESER A:29 , GLN A:261 , GLU A:265 , GLN A:268 , HOH A:605 , HOH A:648binding site for residue PEG A 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4P53)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu A:295 -Pro A:296

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4P53)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4P53)

(-) Exons   (0, 0)

(no "Exon" information available for 4P53)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:360
                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eeee.........hhhhhh.eeeeeeehhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhh..eeeee.hhhhhhh.....eeeeee..eeeeeeee....eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh......hhhhh...hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh.....eeee.....eeee...hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4p53 A  26 WRVSALKEVSYDVVVQPRLLANPALADALSARRLIVIDATVRSLYGEQLAAYLAGHDVEFHLCVIDAHESAKVMETVFEVVDAMDAFGVPRRHAPVLAMGGGVLTDIVGLAASLYRRATPYVRIPTTLIGMIDAGIGAKTGVNFREHKNRLGTYHPSSLTLIDPGFLATLDARHLRNGLAEILKVALVKDAELFDLLEGHGASLVEQRMQPGAALTVLRRAVQGMLEELQPNLWEHQLRRLVDFGHSFSPSVEMAALPELLHGEAVCIDMALSSVLAHHRGLLTEAELGRVLDVMRLLHLPVLHPVCTPDLMRAALADTVKHRDGWQHMPLPRGIGDAVFVNDVTQREIEAALLTLAERD 398
                                    35        45|       57|       72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242||     258       268       278       288       298       308       318       328       338       348       358       368       378       388       398
                                              45|       57|                                                                                                                                                                                 243|                                                                                                                                                    
                                               48        63                                                                                                                                                                                  250
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4P53)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4P53)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4P53)

(-) Gene Ontology  (4, 4)

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