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(-) Description

Title :  CRYSTAL STRUCTURE OF THE DBL3X-DBL4EPSILON DOUBLE DOMAIN FROM THE EXTRACELLULAR PART OF VAR2CSA PFEMP1 FROM PLASMODIUM FALCIPARUM
 
Authors :  S. Gangnard, S. Dechavanne, A. Srivastava, F. Amirat, B. Gamain, A. Lew Bentley, G. A. Bentley
Date :  27 Feb 14  (Deposition) - 04 Mar 15  (Release) - 18 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Pfemp1, Csa, Dbl Fold, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Gangnard, A. Lewit-Bentley, S. Dechavanne, A. Srivastava, F. Amirat, G. A. Bentley, B. Gamain
Structure Of The Dbl3X-Dbl4 Epsilon Region Of The Var2Csa Placental Malaria Vaccine Candidate: Insight Into Dbl Domai Interactions.
Sci Rep V. 5 14868 2015
PubMed-ID: 26450557  |  Reference-DOI: 10.1038/SREP14868

(-) Compounds

Molecule 1 - ERYTHROCYTE MEMBRANE PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: SHUFFLE
    Expression System Taxid: 83333
    Expression System Vector Type: PLASMID
    Fragment: DBL3X-DBL4EPSILON DOUBLE DOMAIN (UNP RESIDUES 1215-1950)
    Gene: VAR2CSA
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 5838
    Strain: FCR-3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4P1T)

(-) Sites  (0, 0)

(no "Site" information available for 4P1T)

(-) SS Bonds  (14, 14)

Asymmetric/Biological Unit
No.Residues
1A:1219 -A:1418
2A:1230 -A:1273
3A:1251 -A:1264
4A:1344 -A:1437
5A:1462 -A:1546
6A:1476 -A:1501
7A:1486 -A:1576
8A:1505 -A:1574
9A:1596 -A:1632
10A:1688 -A:1782
11A:1689 -A:1906
12A:1807 -A:1909
13A:1821 -A:1838
14A:1896 -A:1907

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:1240 -Pro A:1241

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4P1T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4P1T)

(-) Exons   (0, 0)

(no "Exon" information available for 4P1T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:649
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................................hhhhhh..hhh.ee.....ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.................hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..hhhhhh..hhhhhhhh.hhhhh.................................................hhhhhh....hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.................hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4p1t A 1218 SCDLQATNYIRGCQSKTYDGKIFPGKGGEKQWICKDTIIHGDTNGACIPPRTQNLCVGELWDKSYGGRSNIKQDTKELLKEKIKNAIHKETELLYEYHDTGTAIISKNDKKGQKGKNDPNGLPKGFCHAVQRSFIDYKNMILGTSVNIYEHIGKLQEDIKKIIEKGTPENVNAWWKGIEREMWDAVRCAITKINKKNNNGIFNGDECGVSPPTGNDEDQSVSWFKEWGEQFCIERLRYEQNIREACTICINSKSGDKIQGACKRKCEKYKKYISEKKQEWDKQKTKYENKYVGKSASDLLKENYPECISANFDFIFNDNIEYKTYYPYGDYSSICSCEQVKYYKYNNAEKKNNKLLCYEKDNDMTWSKKYIKKLSLEGVYVPPRRQQLCLYELFPIIIKNEEGMEKAKEELLETLQIVAEREAYYLWKQYNPTGKGIDDANKKACCAIRGSFYDLEDIIKGNDLVHDEYTKYIDSKLNEIFGSSDTNDIDTKRARTDWWENEPDRKTIRQLVWDAMQSGVRYAVEEKNENFPLCMGVEHIGIAKPQFIRWLEEWTNEFCEKYTKYFEDMKSKCIECKKACANYANWLNPKRIEWNGMSNYYNKIYRKSMIMAPTVIDYLNKRCHGEINGNYICCSCKNIGAYQTTSGTV 1922
                                  1227      1237      1247      1257      1267      1277      1287      1297      1307      1317      1327      1337      1347      1357      1367      1377      1400      1410      1420      1430      1440      1450      1460      1470      1487   || 1499      1509      1519      1529      1539      1549      1559      1569      1579      1589      1599      1609   || 1623      1633      1643      1653      1663      1673      1683      1693      1703      1713      1723      1733      1743 ||   1758      1768      1778      1788      1798      1808      1818  ||  1842      1852      1862      1883      1893      1903      1913         
                                                                                                                                                                                                1385|                                                                           1478| 1491|                                                                                                                   1613|                                                                                                                           1745|                                                                  1821|                              1870|                                        
                                                                                                                                                                                                 1399                                                                            1486  1494                                                                                                                    1618                                                                                                                            1751                                                                   1836                               1882
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4P1T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4P1T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4P1T)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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(no "Sites" information available for 4p1t)
 
  Cis Peptide Bonds
    Phe A:1240 - Pro A:1241   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q6UDW7_PLAFA | Q6UDW7: 2y8d 3bqi 3bqk 3bql 3cml 3cpz

(-) Related Entries Specified in the PDB File

2wau STRUCTURE OF DBL3X DOMAIN, WHICH IS THE FIRST HALF OF THE DBL3X- DBL4EPSILON DOUBLE-DOMAIN STRUCTURE
3cml STRUCTURE OF DBL3X DOMAIN, WHICH IS THE FIRST HALF OF THE DBL3X- DBL4EPSILON DOUBLE-DOMAIN STRUCTURE