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(-) Description

Title :  PRO-CARBOXYPEPTIDASE U IN COMPLEX WITH 5-(3-AMINOPROPYL)-1-PROPYL-6,7-DIHYDRO-4H-BENZIMIDAZOLE-5-CARBOXYLIC ACID
 
Authors :  K. Hallberg, T. Sjogren
Date :  21 Feb 14  (Deposition) - 13 Aug 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Inhibitor, Drug Discovery, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Brink, A. Dahlen, T. Olsson, M. Polla, T. Svensson
Design And Synthesis Of Conformationally Restricted Inhibitors Of Active Thrombin Activatable Fibrinolysis Inhibitor (Tafia).
Bioorg. Med. Chem. V. 22 2261 2014
PubMed-ID: 24588961  |  Reference-DOI: 10.1016/J.BMC.2014.02.010

(-) Compounds

Molecule 1 - CARBOXYPEPTIDASE B2
    ChainsA
    EC Number3.4.17.20
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System CommonFALL ARMYWORM
    Expression System Taxid7108
    GeneCPB2
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCARBOXYPEPTIDASE U, CPU, PLASMA CARBOXYPEPTIDASE B, PCPB, THROMBIN-ACTIVABLE FIBRINOLYSIS INHIBITOR, TAFI

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric/Biological Unit (4, 4)
No.NameCountTypeFull Name
12B81Ligand/Ion(5R)-5-(3-AMINOPROPYL)-1-PROPYL-4,5,6,7-TETRAHYDRO-1H-BENZIMIDAZOLE-5-CARBOXYLIC ACID
2DMS1Ligand/IonDIMETHYL SULFOXIDE
3NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
4ZN1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:181 , GLU A:184 , ASN A:256 , ARG A:257 , HIS A:310 , SER A:311 , TYR A:312 , SER A:321 , LEU A:362 , ASP A:370 , GLU A:385 , ZN A:502 , DMS A:503 , HOH A:631 , HOH A:633 , HOH A:690 , HOH A:721binding site for residue 2B8 A 501
2AC2SOFTWAREHIS A:181 , GLU A:184 , HIS A:310 , 2B8 A:501binding site for residue ZN A 502
3AC3SOFTWAREGLN A:55 , PRO A:56 , VAL A:57 , LEU A:61 , LEU A:362 , TYR A:363 , 2B8 A:501 , HOH A:690 , HOH A:721binding site for residue DMS A 503
4AC4SOFTWAREGLN A:104 , ASN A:108 , GLU A:398 , HOH A:711 , HOH A:734binding site for residue NAG A 504

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:178 -A:191
2A:250 -A:274
3A:265 -A:279

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gln A:55 -Pro A:56
2Ser A:311 -Tyr A:312
3Pro A:319 -Tyr A:320
4Arg A:387 -Asp A:388

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4P10)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4P10)

(-) Exons   (0, 0)

(no "Exon" information available for 4P10)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:402
                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhhhhhh.eeeee..hhhhh.....eeeeee..hhhhhhhhhhhhh..eeeee.hhhhhhhhhhhh.......hhhhhhh..hhhhhhhhhhhhhhhh...eeeeeeee.....eeeeeee........eeeeee.......hhhhhhhhhhhhhhhhhh..hhhhhhhhhheeeeee...hhhhhhhhhhh...................hhhhh...........................hhhhhhhhhhhhhh...eeeeeeeee...eeee..........hhhhhhhhhhhhhhhhhhhh.....eeee..........hhhhhhhh....eeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4p10 A  25 SGQVLAALPRTSRQVQVLQNLTTTYEIVLWQPVTADLIVKKKQVHFFVNASDVDNVKAHLNVSGIPCSVLLADVEDLIQQQISNDTVSPRASASYYEQYHSLNEIYSWIEFITERHPDMLTKIHIGSSFEKYPLYVLKVSGKEQAAKNAIWIDCGIHAREWISPAFCLWFIGHITQFYGIIGQYTNLLRLVDFYVMPVVNVDGYDYSWKKNRMWRKNRSFYANNHCIGTDLNRNFASKHWCEEGASSSSCSETYCGLYPESEPEVKAVASFLRRNINQIKAYISMHSYSQHIVFPYSYTRSKSKDHEELSLVASEAVRAIEKTSKNTRYTYGQGSETLYLAPGGGDDWIYDLGIKYSFTIELRDTGTYGFLLPERYIKPTCREAFAAVSKIAWHVIRNVLEP 426
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424  

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4P10)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4P10)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4P10)

(-) Gene Ontology  (23, 23)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CBPB2_HUMAN | Q96IY43d66 3d67 3d68 3lms 5hvf 5hvg 5hvh

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4P10)