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(-) Description

Title :  CRYSTAL STRUCTURE OF VIBRIO CHOLERAE ADENYLATION DOMAIN ALME IN COMPLEX WITH GLYCYL-ADENOSINE-5'-PHOSPHATE
 
Authors :  C. D. Fage, J. C. Henderson, A. T. Keatinge-Clay, M. S. Trent
Date :  04 Feb 14  (Deposition) - 31 Dec 14  (Release) - 31 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.26
Chains :  Asym./Biol. Unit :  A
Keywords :  Adenylation Domain, Glycine, Atp, Glycyl-Adenosine-5'-Phosphate (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. C. Henderson, C. D. Fage, J. R. Cannon, J. S. Brodbelt, A. T. Keatinge-Clay, M. S. Trent
Antimicrobial Peptide Resistance Of Vibrio Cholerae Results From An Lps Modification Pathway Related To Nonribosomal Peptide Synthetases.
Acs Chem. Biol. V. 9 2382 2014
PubMed-ID: 25068415  |  Reference-DOI: 10.1021/CB500438X

(-) Compounds

Molecule 1 - ENTEROBACTIN SYNTHETASE COMPONENT F-RELATED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: VC_1579
    Organism Scientific: VIBRIO CHOLERAE SEROTYPE O1
    Organism Taxid: 243277
    Strain: ATCC 39315 / EL TOR INABA N16961

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1GAP1Ligand/IonGLYCYL-ADENOSINE-5'-PHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:246 , ASP A:247 , CYS A:316 , GLY A:317 , GLN A:318 , ALA A:319 , ASN A:338 , LEU A:339 , TYR A:340 , GLY A:341 , PRO A:342 , THR A:343 , ILE A:347 , ILE A:365 , ASP A:432 , ARG A:446 , LYS A:452 , ARG A:457 , HOH A:794 , HOH A:800 , HOH A:820 , HOH A:838binding site for residue GAP A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OXI)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Trp A:481 -Pro A:482

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OXI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OXI)

(-) Exons   (0, 0)

(no "Exon" information available for 4OXI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:526
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhh...eeeee..eeeehhhhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhh...eee.hhhhhhhhhhhhhhh....eeee.....hhhhhhhh...eeee......hhhhh..........eeeeeee.......eeeeeehhhhhhhhhhhhhhh......eeee......hhhhhhhhhhhhhh.eeee.hhhhh.hhhhhhhhhh..eeee.hhhhhhhhhh............eeeee....hhhhhhhhhhhhh..eeeee.hhhhh...eeee.hhhhh.......ee.....eeee.....eee........eeeeee...........hhhhhhhheeee..eeeeeeeeeeeee..eeeeeee...eeee..eeeehhhhhhhhhhhhh...eeeee...........eeeee......hhhhhhhhhh..........eeee........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oxi A  15 YGVVHNQFINCETRHSILAAIQANRHAPALWVKQKTYTYQEMTDMALSLSDYWHLQGVQRVAILSVRDLAAYSAIWASYLGGMTYIPLNARATTEQIQETLIATQCDSIMVDAQQLSRLSSLLETCIDRLHIYALPDVDVEPLRQQYPQHTFHTVQITEQDVELLVVKYLDNEHEYAYIMQTSGSTGKPKRIAVSYSNLHCYISQIDKLFPLNAQDRVGQYSDLTFDLSVHDIFYSLISGACLYVVPELAKLSPAEFIHHHQLTVWLSVPTVIELALQRQTLTPHSLPSLRLSFFCGQALLHDLAEQWQQATQQPVINLYGPTECTIAVTYHRFVAHSGMASVPIGRAFEEECLAIINEQGELMRFESAPEGYRGELLLSGKQLVKGYLNDPLNTQSAFFQHEGRLWYRSGDIVTKSNGVLIHLGRRDHQVKIAGQRVELEEIETVVRRVTQAHSVAIVPWPLSESGYASGTVAFVDTHTQWQPDLWLSQCKQQLNPTFVPKRWYAIEQLPRKTDIKALQQQLASQ 550
                                    24|       39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530 ||    544      
                                    24|                                                                                                                                                           188|                                                                                                                                                                                                                                                                                                                                                   532|             
                                     30                                                                                                                                                            190                                                                                                                                                                                                                                                                                                                                                    537
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OXI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OXI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OXI)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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