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(-) Description

Title :  ANCESTRAL STEROID RECEPTOR 2 DBD HELIX MUTANT - SRE DNA COMPLEX
 
Authors :  E. A. Ortlund
Date :  20 Feb 14  (Deposition) - 29 Oct 14  (Release) - 29 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,E,F,I,J,K,L
Biol. Unit 1:  A,B,I,J  (1x)
Biol. Unit 2:  E,F,K,L  (1x)
Keywords :  Steroid Receptor Dna Binding Domain, Zinc Finger, Transcription Factor, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. N. Mckeown, J. T. Bridgham, D. W. Anderson, M. N. Murphy, E. A. Ortlund, J. W. Thornton
Evolution Of Dna Specificity In A Transcription Factor Family Produced A New Gene Regulatory Module.
Cell(Cambridge, Mass. ) V. 159 58 2014
PubMed-ID: 25259920  |  Reference-DOI: 10.1016/J.CELL.2014.09.003

(-) Compounds

Molecule 1 - ANCESTRAL STEROID RECEPTOR 2 DBD HELIX MUTANT
    Chains: A, B, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: DNA BINDING DOMAIN
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: PHYLOGENETICALLY RECONSTRUCTED
 
Molecule 2 - 5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*AP*GP*TP*GP*TP*TP*CP*TP*G) -3'
    Chains: I, K
    Engineered: YES
    Other Details: STEROID RECEPTOR RESPONSE ELEMENT
    Synthetic: YES
 
Molecule 3 - 5'-D(*TP*CP*AP*GP*AP*AP*CP*AP*CP*TP*CP*TP*GP*TP*TP*CP*TP*G) -3'
    Chains: J, L
    Engineered: YES
    Other Details: STEROID RECEPTOR RESPONSE ELEMENT
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABEFIJKL
Biological Unit 1 (1x): AB  IJ  
Biological Unit 2 (1x):   EF  KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1ZN8Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:43 , CYS A:49 , CYS A:59 , CYS A:62BINDING SITE FOR RESIDUE ZN A 101
2AC2SOFTWARECYS A:7 , CYS A:10 , CYS A:24 , CYS A:27BINDING SITE FOR RESIDUE ZN A 102
3AC3SOFTWARECYS B:7 , CYS B:10 , CYS B:24 , CYS B:27BINDING SITE FOR RESIDUE ZN B 101
4AC4SOFTWARECYS B:43 , CYS B:49 , CYS B:59 , CYS B:62BINDING SITE FOR RESIDUE ZN B 102
5AC5SOFTWARECYS E:43 , CYS E:49 , CYS E:59 , CYS E:62BINDING SITE FOR RESIDUE ZN E 101
6AC6SOFTWARECYS E:7 , CYS E:10 , CYS E:24 , CYS E:27BINDING SITE FOR RESIDUE ZN E 102
7AC7SOFTWARECYS F:43 , CYS F:49 , CYS F:59 , CYS F:62BINDING SITE FOR RESIDUE ZN F 101
8AC8SOFTWARECYS F:7 , CYS F:10 , CYS F:24 , CYS F:27BINDING SITE FOR RESIDUE ZN F 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OV7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OV7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OV7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OV7)

(-) Exons   (0, 0)

(no "Exon" information available for 4OV7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:73
                                                                                                        
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eee..eeehhhhhhhhhhhhhh.....................hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                  4ov7 A  3 PQKVCLICGDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLRKCLQAGMTLG 75
                                    12        22        32        42        52        62        72   


Chain B from PDB  Type:PROTEIN  Length:70
                                                                                                     
               SCOP domains ---------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee..eeehhhhhhhhhhhhhh.....................hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  4ov7 B  5 KVCLICGDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLRKCLQAGMTL 74
                                    14        24        34        44        54        64        74


Chain E from PDB  Type:PROTEIN  Length:72
                                                                                                       
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eee..eeehhhhhhhhhhhhhh.....................hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  4ov7 E  3 PQKVCLICGDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLRKCLQAGMTL 74
                                    12        22        32        42        52        62        72  


Chain F from PDB  Type:PROTEIN  Length:70
                                                                                                     
               SCOP domains ---------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eee..eeehhhhhhhhhhhhhh....................hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  4ov7 F  4 QKVCLICGDEASGCHYGVLTCGSCKVFFKRAVEGHNYLCAGRNDCIIDKIRRKNCPACRLRKCLQAGMTL 74
                                    13        23        33   ||   44        54        64        74
                                                            37|                                   
                                                             39                                   


Chain I from PDB  Type:DNA  Length:18
                                                 
                  4ov7 I  1 CCAGAACAGAGTGTTCTG 18
                                    10        


Chain J from PDB  Type:DNA  Length:18
                                                 
                  4ov7 J  1 TCAGAACACTCTGTTCTG 18
                                    10        


Chain K from PDB  Type:DNA  Length:18
                                                 
                  4ov7 K  1 CCAGAACAGAGTGTTCTG 18
                                    10        


Chain L from PDB  Type:DNA  Length:18
                                                 
                  4ov7 L  1 TCAGAACACTCTGTTCTG 18
                                    10
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OV7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OV7)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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4oln 4ond 4oor