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(-) Description

Title :  CRYSTAL STRUCTURE OF DNAT84-153-DT10 SSDNA COMPLEX REVEALS A NOVEL SINGLE-STRANDED DNA BINDING MODE
 
Authors :  Z. Liu, P. Chen, L. Niu, M. Teng, X. Li
Date :  15 Feb 14  (Deposition) - 13 Aug 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.83
Chains :  Asym./Biol. Unit :  A,B,C,D,E,S
Keywords :  Dna Binding, Replication-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Liu, P. Chen, X. Wang, G. Cai, L. Niu, M. Teng, X. Li
Crystal Structure Of Dnat84-153-Dt10 Ssdna Complex Reveals Novel Single-Stranded Dna Binding Mode.
Nucleic Acids Res. 2014
PubMed-ID: 25053836  |  Reference-DOI: 10.1093/NAR/GKU633

(-) Compounds

Molecule 1 - PRIMOSOMAL PROTEIN 1
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 84-154
    Gene: DNAT, B4362, JW4326
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12
    Synonym: PRIMOSOMAL PROTEIN I
 
Molecule 2 - DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3')
    Chains: S
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDES

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4OU7)

(-) Sites  (0, 0)

(no "Site" information available for 4OU7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OU7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OU7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OU7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OU7)

(-) Exons   (0, 0)

(no "Exon" information available for 4OU7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:71
                                                                                                       
               SCOP domains ----------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.........hhhhhhhhh........hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 4ou7 A  84 VPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRAS 154
                                    93       103       113       123       133       143       153 


Chain B from PDB  Type:PROTEIN  Length:71
                                                                                                       
               SCOP domains ----------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.........hhhhhhhhh........hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 4ou7 B  84 VPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRAS 154
                                    93       103       113       123       133       143       153 


Chain C from PDB  Type:PROTEIN  Length:70
                                                                                                      
               SCOP domains ---------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.........hhhhhhhhh........hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 4ou7 C  84 VPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRA 153
                                    93       103       113       123       133       143       153


Chain D from PDB  Type:PROTEIN  Length:71
                                                                                                       
               SCOP domains ----------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.........hhhhhhhhh........hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 4ou7 D  84 VPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRAS 154
                                    93       103       113       123       133       143       153 


Chain E from PDB  Type:PROTEIN  Length:71
                                                                                                       
               SCOP domains ----------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.........hhhhhhhhh........hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 4ou7 E  84 VPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRAS 154
                                    93       103       113       123       133       143       153 


Chain S from PDB  Type:DNA  Length:10
                                          
                 4ou7 S   1 TTTTTTTTTT  10
                                    10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OU7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OU7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OU7)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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(no "Sites" information available for 4ou7)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4ou7)
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DNAT_ECOLI | P0A8J2: 2ru8 4ou6

(-) Related Entries Specified in the PDB File

4ou6