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(-) Description

Title :  KLEBSIELLA PNEUMONIAE COMPLEXED WITH NADPH AND 6-ETHYL-5-[(3R)-3-[3-METHOXYL-5-(PYRIDINE-4-YL)PHENYL]BUT-1-YN-1-YL]PYRIMIDINE-2,4-DIAMINE (UCP1006)
 
Authors :  K. M. Lamb, A. C. Anderson
Date :  12 Feb 14  (Deposition) - 03 Dec 14  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Oxidoreductase, Hydride Shift, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. M. Lamb, M. N. Lombardo, J. Alverson, N. D. Priestley, D. L. Wright, A. C. Anderson
Crystal Structures Of Klebsiella Pneumoniae Dihydrofolate Reductase Bound To Propargyl-Linked Antifolates Reveal Features For Potency And Selectivity.
Antimicrob. Agents Chemother. V. 58 7484 2014
PubMed-ID: 25288083  |  Reference-DOI: 10.1128/AAC.03555-14

(-) Compounds

Molecule 1 - DIHYDROFOLATE REDUCTASE
    Chains: A, B, C, D
    EC Number: 1.5.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FOLA, D364_00170
    Organism Scientific: KLEBSIELLA PNEUMONIAE CG43
    Organism Taxid: 1244085

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 18)

Asymmetric Unit (7, 18)
No.NameCountTypeFull Name
106U4Ligand/Ion6-ETHYL-5-{(3R)-3-[3-METHOXY-5-(PYRIDIN-4-YL)PHENYL]BUT-1-YN-1-YL}PYRIMIDINE-2,4-DIAMINE
2CA2Ligand/IonCALCIUM ION
3CAC2Ligand/IonCACODYLATE ION
4CL4Ligand/IonCHLORIDE ION
5EOH1Ligand/IonETHANOL
6NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
7PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
106U1Ligand/Ion6-ETHYL-5-{(3R)-3-[3-METHOXY-5-(PYRIDIN-4-YL)PHENYL]BUT-1-YN-1-YL}PYRIMIDINE-2,4-DIAMINE
2CA-1Ligand/IonCALCIUM ION
3CAC-1Ligand/IonCACODYLATE ION
4CL-1Ligand/IonCHLORIDE ION
5EOH1Ligand/IonETHANOL
6NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
106U1Ligand/Ion6-ETHYL-5-{(3R)-3-[3-METHOXY-5-(PYRIDIN-4-YL)PHENYL]BUT-1-YN-1-YL}PYRIMIDINE-2,4-DIAMINE
2CA-1Ligand/IonCALCIUM ION
3CAC1Ligand/IonCACODYLATE ION
4CL-1Ligand/IonCHLORIDE ION
5EOH-1Ligand/IonETHANOL
6NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 3 (3, 3)
No.NameCountTypeFull Name
106U1Ligand/Ion6-ETHYL-5-{(3R)-3-[3-METHOXY-5-(PYRIDIN-4-YL)PHENYL]BUT-1-YN-1-YL}PYRIMIDINE-2,4-DIAMINE
2CA-1Ligand/IonCALCIUM ION
3CAC-1Ligand/IonCACODYLATE ION
4CL-1Ligand/IonCHLORIDE ION
5EOH-1Ligand/IonETHANOL
6NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
7PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 4 (3, 3)
No.NameCountTypeFull Name
106U1Ligand/Ion6-ETHYL-5-{(3R)-3-[3-METHOXY-5-(PYRIDIN-4-YL)PHENYL]BUT-1-YN-1-YL}PYRIMIDINE-2,4-DIAMINE
2CA-1Ligand/IonCALCIUM ION
3CAC1Ligand/IonCACODYLATE ION
4CL-1Ligand/IonCHLORIDE ION
5EOH-1Ligand/IonETHANOL
6NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:6 , ALA A:7 , ILE A:14 , ALA A:19 , TRP A:22 , GLY A:43 , ARG A:44 , THR A:46 , ILE A:62 , SER A:63 , SER A:64 , SER A:76 , ILE A:94 , GLY A:95 , GLY A:96 , GLY A:97 , ARG A:98 , VAL A:99 , TYR A:100 , GLN A:102 , THR A:123 , 06U A:402BINDING SITE FOR RESIDUE NAP A 401
02AC2SOFTWAREILE A:5 , ALA A:6 , MET A:20 , ASP A:27 , PHE A:31 , MET A:42 , THR A:46 , ILE A:50 , LEU A:54 , ILE A:94 , THR A:113 , NAP A:401BINDING SITE FOR RESIDUE 06U A 402
03AC3SOFTWAREALA A:83 , GLY A:86BINDING SITE FOR RESIDUE EOH A 403
04AC4SOFTWAREALA B:6 , ALA B:7 , ILE B:14 , GLY B:15 , MET B:16 , ASN B:18 , ALA B:19 , MET B:20 , ARG B:44 , LEU B:45 , ILE B:62 , SER B:63 , SER B:64 , VAL B:78 , ILE B:94 , GLY B:96 , GLY B:97 , ARG B:98 , VAL B:99 , GLN B:102 , THR B:123 , 06U B:402BINDING SITE FOR RESIDUE NAP B 401
05AC5SOFTWAREILE B:5 , ALA B:6 , MET B:20 , ASP B:27 , LEU B:28 , TRP B:30 , PHE B:31 , MET B:42 , ARG B:52 , LEU B:54 , ILE B:94 , TYR B:100 , NAP B:401BINDING SITE FOR RESIDUE 06U B 402
06AC6SOFTWAREARG B:158BINDING SITE FOR RESIDUE CAC B 403
07AC7SOFTWAREALA C:6 , ALA C:7 , ILE C:14 , ASN C:18 , ALA C:19 , MET C:20 , TRP C:22 , GLY C:43 , ARG C:44 , LEU C:45 , THR C:46 , ILE C:62 , SER C:64 , LYS C:65 , SER C:76 , ILE C:94 , GLY C:95 , GLY C:96 , GLY C:97 , ARG C:98 , VAL C:99 , TYR C:100 , GLN C:102 , 06U C:402BINDING SITE FOR RESIDUE NAP C 401
08AC8SOFTWAREALA A:145 , GLN A:146 , ILE C:5 , ALA C:6 , MET C:20 , ASP C:27 , PHE C:31 , SER C:49 , ILE C:50 , ILE C:94 , TYR C:100 , THR C:113 , NAP C:401BINDING SITE FOR RESIDUE 06U C 402
09AC9SOFTWARELYS C:58 , ASP C:70BINDING SITE FOR RESIDUE CL C 404
10BC1SOFTWAREALA D:6 , ALA D:7 , ILE D:14 , ASN D:18 , ALA D:19 , MET D:20 , ARG D:44 , LEU D:45 , THR D:46 , ILE D:62 , SER D:63 , SER D:64 , ILE D:94 , GLY D:95 , GLY D:96 , GLY D:97 , ARG D:98 , VAL D:99 , TYR D:100 , GLN D:102 , THR D:123 , 06U D:402BINDING SITE FOR RESIDUE NAP D 401
11BC2SOFTWAREILE D:5 , ALA D:6 , ALA D:7 , MET D:20 , ASP D:27 , LEU D:28 , PHE D:31 , THR D:46 , ARG D:52 , LEU D:54 , ILE D:94 , TYR D:100 , NAP D:401BINDING SITE FOR RESIDUE 06U D 402
12BC3SOFTWAREHIS D:114 , HOH D:504BINDING SITE FOR RESIDUE CAC D 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OSG)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gly A:95 -Gly A:96
2Gly B:95 -Gly B:96
3Gly C:95 -Gly C:96
4Gly D:95 -Gly D:96

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OSG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OSG)

(-) Exons   (0, 0)

(no "Exon" information available for 4OSG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeehhh.eee........hhhhhhhhhhhhh...eeeehhhhhhhh.......eeee..........eee..hhhhhh.......eee..hhhhhhhhh....eeeeeee.......ee........eeeeeeeee.........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4osg A   1 MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         


Chain B from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeehhh.eee........hhhhhhhhhhhh....eeeehhhhhhhh.......eeee..........eee..hhhhhh.......eee..hhhhhhhhh....eeeeeee.......ee........eeeeeeeee.........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4osg B   1 MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         


Chain C from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeehhh.eee........hhhhhhhhhhhh....eeeehhhhhhhh.......eeee..........eee..hhhhhh.......eeeeehhhhhhhhh....eeeeeee.......ee........eeeeeeeee.........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4osg C   1 MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         


Chain D from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeehhh.eee........hhhhhhhhhhhh....eeeehhhhhhhh.......eeee..........eee..hhhhhh.......eeeeehhhhhhhhh....eeeeeeee......ee........eeeeeeeee........eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4osg D   1 MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OSG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OSG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OSG)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4OSG)

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4or7