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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE 2-DEHYDROPANTOATE 2-REDUCTASE PANE FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH NADP AND OXAMATE
 
Authors :  Seattle Structural Genomics Center For Infectious Disease, Se Structural Genomics Center For Infectious Disease (Ssgcid)
Date :  23 Jan 14  (Deposition) - 26 Feb 14  (Release) - 26 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Ketopantoate Reductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. M. Dranow, A. K. Wernimont, A. Abendroth, P. G. Pierce, J. Bullen, T. E. Edwards, D. Lorimer, Seattle Structural Genomics Center For Infectious Disease
Crystal Structure Of Putative 2-Dehydropantoate 2-Reductase Pane From Mycobacterium Tuberculosis Complexed With Nadp An Oxamate
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE 2-DEHYDROPANTOATE 2-REDUCTASE
    Chains: A
    EC Number: 1.1.1.169
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: MYTUD.18678.A.B1
    Gene: RV2573, MT2649, MTCY227.28C
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Synonym: KETOPANTOATE REDUCTASE, KPA REDUCTASE, KPR

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 5)

Asymmetric Unit (5, 5)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CL1Ligand/IonCHLORIDE ION
3GOL1Ligand/IonGLYCEROL
4NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
5OXM1Ligand/IonOXAMIC ACID
Biological Unit 1 (4, 8)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3GOL2Ligand/IonGLYCEROL
4NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
5OXM2Ligand/IonOXAMIC ACID

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:9 , PRO A:10 , GLY A:11 , ALA A:12 , VAL A:13 , CYS A:31 , GLY A:32 , HIS A:33 , THR A:34 , ALA A:72 , VAL A:73 , LYS A:74 , GLN A:77 , ALA A:80 , TRP A:84 , LEU A:98 , GLN A:99 , ASN A:100 , VAL A:122 , CYS A:124 , ALA A:126 , SER A:246 , ARG A:255 , GLU A:258 , OXM A:302 , ACT A:303 , HOH A:409 , HOH A:444 , HOH A:503 , HOH A:516 , HOH A:579 , HOH A:580 , HOH A:619 , HOH A:620 , HOH A:659BINDING SITE FOR RESIDUE NAP A 301
2AC2SOFTWAREASN A:100 , CYS A:124 , LYS A:177 , ASN A:181 , THR A:245 , SER A:246 , ARG A:262 , NAP A:301 , HOH A:580BINDING SITE FOR RESIDUE OXM A 302
3AC3SOFTWAREPRO A:10 , THR A:34 , VAL A:55 , NAP A:301 , HOH A:620BINDING SITE FOR RESIDUE ACT A 303
4AC4SOFTWAREARG A:158 , ARG A:198 , GLN A:241BINDING SITE FOR RESIDUE CL A 304
5AC5SOFTWAREARG A:199 , ASP A:200 , ASP A:201 , HOH A:590BINDING SITE FOR RESIDUE GOL A 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OL9)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Gly A:53 -Pro A:54
2Gly A:64 -Pro A:65
3Gly A:293 -Pro A:294

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OL9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OL9)

(-) Exons   (0, 0)

(no "Exon" information available for 4OL9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..hhhhhhhhhhhhhhh...eee......eeeeee.....eeee.....hhhhh.....eeee..hhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhh...eeeeeeee..eee.....eee....eeee..hhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh.....hhhhhhhhh....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ol9 A  -1 HMIATGIALVGPGAVGTTVAALLHKAGYSPLLCGHTPRAGIELRRDGADPIVVPGPVHTSPREVAGPVDVLILAVKATQNDAARPWLTRLCDERTVVAVLQNGVEQVEQVQPHCPSSAVVPAIVWCSAETQPQGWVRLRGEAALVVPTGPAAEQFAGLLRGAGATVDCDPDFTTAAWRKLLVNALAGFMVLSGRRSAMFRRDDVAALSRRYVAECLAVARAEGARLDDDVVDEVVRLVRSAPQDMGTSMLADRAAHRPLEWDLRNGVIVRKARAHGLATPISDVLVPLLAAASDGPG 295
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OL9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OL9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OL9)

(-) Gene Ontology  (7, 13)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

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