4OKK - JenaLib

Title :   CRYSTAL STRUCTURE OF RNASE AS FROM M TUBERCULOSIS IN COMPLEX WITH UMP

Authors :   M. Romano, R. Van De Weerd, F. C. C. Brouwer, G. N. Roviello, R. Lacroix M. Sparrius, G. Van Den Brink-Van Stempvoort, J. J. Maaskant, A. M. Sar, B. J. Appelmelk, J. J. Geurtsen, R. Berisio

Date :   22 Jan 14 (Deposition) - 21 May 14 (Release) - 21 May 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.21

Chains :   Asym./Biol. Unit : A,B

Keywords :   Alpha/Beta Fold, Exoribonuclease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Romano, R. Van De Weerd, F. C. C. Brouwer, G. N. Roviello, R. Lacroix, M. Sparrius, G. Van Den Brink-Van Stempvoort, J. J. Maaskant, A. M. Van Der Sar, B. J. Appelmelk, J. J. Geurtsen, R. Berisio
Structure And Function Of Rnase As, A Polyadenylate-Specifi Exoribonuclease Affecting Mycobacterial Virulence In Vivo
Structure V. 22 719 2014
PubMed-ID: 24704253 | Reference-DOI: 10.1016/J.STR.2014.01.014

Compounds

Molecule 1 - 3'-5' EXORIBONUCLEASE RV2179C/MT2234.1
	Chains	:	A, B
	EC Number	:	3.1.13.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	RV2179C, MT2234.1
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	1773
	Synonym	:	RNASE AS

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:6 , THR A:7 , GLU A:8 , PHE A:9 , TRP A:46 , VAL A:47 , MG A:202 , MG A:204 , HOH A:346 , HOH A:464	BINDING SITE FOR RESIDUE U5P A 201
2	AC2	SOFTWARE	ASP A:6 , THR A:7 , ASP A:95 , U5P A:201 , HOH A:464	BINDING SITE FOR RESIDUE MG A 202
3	AC3	SOFTWARE	TYR A:5 , ASP A:6 , ALA A:89 , TRP A:90 , ASP A:145 , GLN A:149	BINDING SITE FOR RESIDUE MG A 203
4	AC4	SOFTWARE	ASP A:6 , GLU A:8 , ASP A:145 , U5P A:201 , HOH A:331	BINDING SITE FOR RESIDUE MG A 204
5	AC5	SOFTWARE	MET A:106 , ASP B:6 , THR B:7 , GLU B:8 , PHE B:9 , TRP B:46 , VAL B:47 , ASP B:145 , MG B:202 , MG B:204 , HOH B:305	BINDING SITE FOR RESIDUE U5P B 201
6	AC6	SOFTWARE	ASP B:6 , U5P B:201 , MG B:204 , HOH B:302 , HOH B:379 , HOH B:431	BINDING SITE FOR RESIDUE MG B 202
7	AC7	SOFTWARE	GLU B:37 , SER B:65 , ARG B:66 , GLN B:67 , HOH B:387 , HOH B:402	BINDING SITE FOR RESIDUE MG B 203
8	AC8	SOFTWARE	ASP B:6 , GLU B:8 , ASP B:145 , U5P B:201 , MG B:202	BINDING SITE FOR RESIDUE MG B 204

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:160
                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee....eeeeeeeeee....eeeeee...hhhhhhhhhhhhhhhhh.......eehhhhhhhhhhhhh........eeee..hhhhhhhhhhhhhhhhhh........eehhhhhhhh.............hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4okk A   1 VRYFYDTEFIEDGHTIELISIGVVAEDGREYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQIRLDLEEFLRIDGTDSIELWAWVGAYDHVALCQLWGPMTALPPTVPRFTRELRQLWEDRGCPRMPPRPRDVHDALVDARDQLRRFRLITSTD 160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain B from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee....eeeeeeeeee....eeeeee...hhhhhhhhhhhhhhhhh.......eehhhhhhhhhhhhh........eeee..hhhhhhhhhh...hhhhh........eehhhhhhhh.............hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4okk B   1 VRYFYDTEFIEDGHTIELISIGVVAEDGREYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQIRLDLEEFLRIDGTDSIELWAWVGAYDHVALCQLWGPMTALPPTVPRFTRELRQLWEDRGCPRMPPRPRDVHDALVDARDQLRRFRLITS 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (11, 21)

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Description